View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_22 (Length: 319)
Name: NF0960_low_22
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 87 - 300
Target Start/End: Original strand, 26017781 - 26017994
Alignment:
| Q |
87 |
agggaggatatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgat |
186 |
Q |
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| T |
26017781 |
agggaggatatgtagatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggagatagacacatgaaacaatatgtgat |
26017880 |
T |
|
| Q |
187 |
agcagagcctgagaccaaagtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaat |
286 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017881 |
agcagaacctgagaccaaagtactcagaattgaacctcatcatgactttttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaat |
26017980 |
T |
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| Q |
287 |
taattgcaatgttc |
300 |
Q |
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|||||||||||||| |
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| T |
26017981 |
taattgcaatgttc |
26017994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 87 - 299
Target Start/End: Original strand, 26003035 - 26003247
Alignment:
| Q |
87 |
agggaggatatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgat |
186 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |
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| T |
26003035 |
agggaggatatgtcgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggagatagacacatgaaacaatatgtgat |
26003134 |
T |
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| Q |
187 |
agcagagcctgagaccaaagtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaat |
286 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
26003135 |
agcagaacctgagaccaaagtactcagaattgaacctcatcatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttgaccaat |
26003234 |
T |
|
| Q |
287 |
taattgcaatgtt |
299 |
Q |
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||||||| ||||| |
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| T |
26003235 |
taattgcgatgtt |
26003247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 95 - 271
Target Start/End: Original strand, 30374295 - 30374471
Alignment:
| Q |
95 |
tatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgatagcagagc |
194 |
Q |
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||||||||| | || |||||||||||||| || ||||||||||||||||| ||||| | ||||| || ||||| ||||||||||||||| ||| |||| |
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| T |
30374295 |
tatgttgatttatgtcgcggtgtttggaggattcaaggatctcttgctgtatcaagaggaattggagaccgacacttgaaacaatgggtgacagcggagc |
30374394 |
T |
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| Q |
195 |
ctgagaccaaagtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatgggaaaaggta |
271 |
Q |
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| ||||| ||||| | |||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
30374395 |
ccgagactaaagttattagaattgaacctgaacatgacttgttaatattagcttcagatggattatgggataaggta |
30374471 |
T |
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