View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0960_low_24 (Length: 306)

Name: NF0960_low_24
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0960_low_24
NF0960_low_24
[»] chr7 (7 HSPs)
chr7 (65-223)||(47256550-47256708)
chr7 (65-223)||(47242422-47242580)
chr7 (65-224)||(47292759-47292915)
chr7 (70-222)||(47267338-47267487)
chr7 (65-201)||(47299386-47299522)
chr7 (70-200)||(47283300-47283430)
chr7 (70-200)||(47278707-47278837)
[»] chr5 (1 HSPs)
chr5 (65-223)||(32731093-32731251)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 47256550 - 47256708
Alignment:
Q  65 gcataggcagaaatagctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgca 164  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47256550 gcatgggcagaaatagctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgca 47256649  T
Q  165 accatcgtgaatatgaacaaatacttccgccaaatacgtacatcaaggaagaagatact 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47256650 accatcgtgaatatgaacaaatacttccgccaaatacgtacatcaaggaagaagatact 47256708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 47242422 - 47242580
Alignment:
Q  65 gcataggcagaaatagctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgca 164  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47242422 gcatgggcagaaatggctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacatgca 47242521  T
Q  165 accatcgtgaatatgaacaaatacttccgccaaatacgtacatcaaggaagaagatact 223  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||| ||||||||||||    
T  47242522 accatcgtgaatacgaacaaatactttcgccaaatacctacatcaaagaagaagatact 47242580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 65 - 224
Target Start/End: Complemental strand, 47292915 - 47292759
Alignment:
Q  65 gcataggcagaaatagctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgca 164  Q
    |||| ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  47292915 gcatgggcagaaatggctcgaggagcacatcgaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccacgcattacatgca 47292816  T
Q  165 accatcgtgaatatgaacaaatacttccgccaaatacgtacatcaaggaagaagatactg 224  Q
    |||||| ||||||  |||||||  || ||||||||||   ||| ||||||||||||||||    
T  47292815 accatcttgaatacaaacaaattttttcgccaaatac---cattaaggaagaagatactg 47292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 47267338 - 47267487
Alignment:
Q  70 ggcagaaatagctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgcaaccat 169  Q
    ||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||    
T  47267338 ggcagaaatggctcgaggagcacataaaccttccattcaacctgtatggaatagggagattctaatggcaagagacccaccacacattacatgcaaccat 47267437  T
Q  170 cgtgaatatgaacaaatacttccgccaaatacgtacatcaaggaagaagatac 222  Q
    | |||||| ||||||||  || || |||||||    |||||||||||||||||    
T  47267438 catgaatacgaacaaattttttcgtcaaatac---aatcaaggaagaagatac 47267487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 65 - 201
Target Start/End: Complemental strand, 47299522 - 47299386
Alignment:
Q  65 gcataggcagaaatagctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgca 164  Q
    |||| ||||||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  47299522 gcatgggcagaaatggctcgaggagcatatcgaccttccattcaacctgtgtggaatagggagattctaatggcaagagaccctccacgcattacatgca 47299423  T
Q  165 accatcgtgaatatgaacaaatacttccgccaaatac 201  Q
    |||||  |||||| |||||||| ||| ||||||||||    
T  47299422 accattttgaatacgaacaaattctttcgccaaatac 47299386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 47283300 - 47283430
Alignment:
Q  70 ggcagaaatagctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgcaaccat 169  Q
    ||||||||| |||||||||||| ||||||||||||||||||| ||||||   || ||||| |||||||| ||||||||||||  ||||||||||||||||    
T  47283300 ggcagaaatggctcgaggagcacatcaaccttccattcaaccagtatggcgcagagagatcctaatggctagagaccctccacgcattacttgcaaccat 47283399  T
Q  170 cgtgaatatgaacaaatacttccgccaaata 200  Q
    ||||||||||||||||||||| || ||||||    
T  47283400 cgtgaatatgaacaaatacttacgtcaaata 47283430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 47278707 - 47278837
Alignment:
Q  70 ggcagaaatagctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgcaaccat 169  Q
    ||||||||| |||||||||||| ||||||||||||||||||| ||||||   || ||||| |||||||||||||||||||||    ||||||||||||||    
T  47278707 ggcagaaatggctcgaggagcacatcaaccttccattcaaccggtatggcgcagagagatcctaatggcaagagaccctccacgtgttacttgcaaccat 47278806  T
Q  170 cgtgaatatgaacaaatacttccgccaaata 200  Q
    | |||||| |||||||||||| || ||||||    
T  47278807 catgaatacgaacaaatactttcgtcaaata 47278837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 32731093 - 32731251
Alignment:
Q  65 gcataggcagaaatagctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatacattacttgca 164  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||    
T  32731093 gcatgggcagaaatggctcgaggagcaaatcaaccttccattcaacctgtatggaatagggagattctaatggcaagagaccctccatgtattacatgca 32731192  T
Q  165 accatcgtgaatatgaacaaatacttccgccaaatacgtacatcaaggaagaagatact 223  Q
    ||||||||||||| |||||||||||| |||||||||| |||||||| ||||||||||||    
T  32731193 accatcgtgaatacgaacaaatactttcgccaaatacctacatcaaagaagaagatact 32731251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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