View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0960_low_25 (Length: 301)

Name: NF0960_low_25
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0960_low_25
NF0960_low_25
[»] chr5 (7 HSPs)
chr5 (10-272)||(1045548-1045810)
chr5 (111-256)||(1032642-1032787)
chr5 (111-256)||(1051965-1052110)
chr5 (106-253)||(1070108-1070255)
chr5 (106-245)||(1048200-1048345)
chr5 (207-256)||(1064905-1064954)
chr5 (141-253)||(1043080-1043192)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 1045548 - 1045810
Alignment:
Q  10 tcataggtatataatatgttttaattccatttattatgcttgcttcaaacatatataaagttgtttaaaatattcactactcatcctatttatttgattt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1045548 tcataggtatataatatgttttaattccatttattatgcttgcttcaaacatatataaagttgtttaaaatattcactactcatcctattcatttgattt 1045647  T
Q  110 tagagtagttttggcaccgttgaccagacaaagatcatacaacaacattcctcaacagcatgctgtcctatattactctcaaagggcctctgaaggtggt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1045648 tagagtagttttggcaccgttgaccagacaaagatcatacaacaacattcctcaacagcatgctgtcctatattactctcaaagggcctctgaaggtggt 1045747  T
Q  210 cttctcatatctgaagctaccggggtctctgaaactgctcaagggtaacttgcaattaataca 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1045748 cttctcatatctgaagctaccggggtctctgaaactgctcaagggtaacttgcaattaataca 1045810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 256
Target Start/End: Original strand, 1032642 - 1032787
Alignment:
Q  111 agagtagttttggcaccgttgaccagacaaagatcatacaacaacattcctcaacagcatgctgtcctatattactctcaaagggcctctgaaggtggtc 210  Q
    ||||| |||||||||||  | || |||  |||||||||   |||| |||||||||  ||||||||||| |||||||| || || || ||  |||||||||    
T  1032642 agagttgttttggcaccactcactagaataagatcatatggcaacgttcctcaacctcatgctgtcctctattactcacagagagcatccaaaggtggtc 1032741  T
Q  211 ttctcatatctgaagctaccggggtctctgaaactgctcaagggta 256  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||||    
T  1032742 ttctcatagctgaagctaccggtgtctctgacactgctcaagggta 1032787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 256
Target Start/End: Original strand, 1051965 - 1052110
Alignment:
Q  111 agagtagttttggcaccgttgaccagacaaagatcatacaacaacattcctcaacagcatgctgtcctatattactctcaaagggcctctgaaggtggtc 210  Q
    ||||| |||||||||||  | || |||  |||||||||   |||| |||||||||  ||||||||||| |||||||| || || || ||  |||||||||    
T  1051965 agagttgttttggcaccactcactagaataagatcatatggcaacgttcctcaacctcatgctgtcctctattactcacagagagcatccaaaggtggtc 1052064  T
Q  211 ttctcatatctgaagctaccggggtctctgaaactgctcaagggta 256  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||||    
T  1052065 ttctcatagctgaagctaccggtgtctctgacactgctcaagggta 1052110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 253
Target Start/End: Original strand, 1070108 - 1070255
Alignment:
Q  106 attttagagtagttttggcaccgttgaccagacaaagatcatacaacaacattcctcaacagcatgctgtcctatattactctcaaagggcctctgaagg 205  Q
    |||| ||||| |||||||||||  | || ||||| ||||| |||  |||| |||| ||||  |||||| |||| || ||||||||||| |||||| ||||    
T  1070108 atttcagagttgttttggcacctctcacaagacagagatcctacggcaacgttccacaacctcatgctatcctctactactctcaaagagcctctaaagg 1070207  T
Q  206 tggtcttctcatatctgaagctaccggggtctctgaaactgctcaagg 253  Q
    ||||||||||||| | ||||||||||| |||||||| || ||||||||    
T  1070208 tggtcttctcatagccgaagctaccggtgtctctgataccgctcaagg 1070255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 245
Target Start/End: Original strand, 1048200 - 1048345
Alignment:
Q  106 attttagagtagttttggcaccgttgaccagacaaagatcata------caacaacattcctcaacagcatgctgtcctatattactctcaaagggcctc 199  Q
    ||||||||||| |||||||||| ||||||||||||| ||  ||      ||||||| ||||| || | ||||   |||| ||||||||||||||| |||     
T  1048200 attttagagtacttttggcaccattgaccagacaaaaatagtaatagtacaacaacgttcctaaaaaacatgacatcctctattactctcaaaggtcctt 1048299  T
Q  200 tgaaggtggtcttctcatatctgaagctaccggggtctctgaaact 245  Q
    | |||  |||||||||||| | |||||  |||||||||||||||||    
T  1048300 taaagtcggtcttctcatagcagaagcagccggggtctctgaaact 1048345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 1064905 - 1064954
Alignment:
Q  207 ggtcttctcatatctgaagctaccggggtctctgaaactgctcaagggta 256  Q
    |||||||||||| | ||||||||||| |||||||| || |||||||||||    
T  1064905 ggtcttctcataaccgaagctaccggtgtctctgacaccgctcaagggta 1064954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 1043080 - 1043192
Alignment:
Q  141 agatcatacaacaacattcctcaacagcatgctgtcctatattactctcaaagggcctctgaaggtggtcttctcatatctgaagctaccggggtctctg 240  Q
    ||||||||||||||  |||||||||    |||||||   ||||| ||||| ||  ||||| |||||||| |||||||| |||||||||| || || || |    
T  1043080 agatcatacaacaatgttcctcaacccattgctgtcaagtattattctcagagaacctctaaaggtggtattctcatagctgaagctactggtgtttcag 1043179  T
Q  241 aaactgctcaagg 253  Q
    | |||||||||||    
T  1043180 acactgctcaagg 1043192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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