View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_28 (Length: 277)
Name: NF0960_low_28
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 43002407 - 43002189
Alignment:
| Q |
1 |
tcaggaattattggaataatgcattccactgcaatcaccttccctgtggcaggaagagaatcatagcaattcttcaaaaatttcaagcattgctcatcat |
100 |
Q |
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| T |
43002407 |
tcaggaattattggaataatgcattccactgcaatcaccttccctgtggcaggaagagaatcatagcaattcttcaaaaatttcaagcattgctcatcat |
43002308 |
T |
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| Q |
101 |
tccaatcatgacatatccactgcattcataaaacataaacttggttttcttcttctcaaaataaatgaaatatattggaaataaactagaaaagcaatta |
200 |
Q |
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| T |
43002307 |
tccaatcatgacatatccactgcattcataaaacataaacttggttttcttcttctcaaaataaatgaaatatattggaaataaactagaaaagcaatta |
43002208 |
T |
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| Q |
201 |
agtagcttcaaatcaataa |
219 |
Q |
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| T |
43002207 |
agtagcttcaaatcaataa |
43002189 |
T |
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Back To:
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 42473567 - 42473627
Alignment:
| Q |
61 |
tcatagcaattcttcaaaaatttcaagcattgctcatcattccaatcatgacatatccact |
121 |
Q |
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| T |
42473567 |
tcatagcagttcttcaaaaatttcaagcagtgctcatcactccagtcatgacaaatccact |
42473627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 49106533 - 49106597
Alignment:
| Q |
60 |
atcatagcaattcttcaaaaatttcaagcattgctcatcattccaatcatgacatatccactgca |
124 |
Q |
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| T |
49106533 |
atcatagcagttcttcaaaagcttcaagcattgttcatcactccaatcatgaagtatccactgca |
49106597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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