View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_3 (Length: 562)
Name: NF0960_low_3
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 13 - 454
Target Start/End: Original strand, 48023076 - 48023517
Alignment:
| Q |
13 |
aatattgatgacaaattatgccagaaagaagtgtggcatgacctgatgagattcatcccatctgcaagtaatctgcttaaaatgatctcaatgtgtttag |
112 |
Q |
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| T |
48023076 |
aatattgatgacaaattatgccagaaagaagtgtggcatgacctgatgagattcatcccatctgcaagtaatctgcttaaaatgatctcaatgtgtttag |
48023175 |
T |
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| Q |
113 |
gggctgcaggaatgtaaaagttgtttggttgcatttcaatatatctacaacatgnnnnnnntttcctcttaaatgatagcaaaggttggctggctcaaaa |
212 |
Q |
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| T |
48023176 |
gggctgcaggaatgtaaaagttgtttggttgcatttcaatatatctacaacacgaaaaaaatttccacttaaatgatagcaaaggttggctggctcaaaa |
48023275 |
T |
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| Q |
213 |
cctgttgaacattgagcttgatatgttttatggtccttgggcggagctgtttgtggccattctaaattgagaaattggtcggtgagatttaggctacaaa |
312 |
Q |
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| T |
48023276 |
cctgttgaacattgagcttgatatgttttatggtccttgggcggagctgtttgtggccattctaaattgagaaattggtcggtgagatttaggctacaaa |
48023375 |
T |
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| Q |
313 |
aaaggagtatgaaccggtcatcactgtgtcttattcagattcaggtacaagtagagcaagaacatattgtgtggaagctccttgtctagattgattagaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48023376 |
aaaggagtatgaaccggtcatcactgtgtcttattcagattcaggtacaagtagagcaagaacatattgtgtggaagctccttgtctagattgattagaa |
48023475 |
T |
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| Q |
413 |
ttagttgcaatgcaacaatttcccaagagtggacatgaatga |
454 |
Q |
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| T |
48023476 |
ttagttgcaatgcaacaatttcccaagagtagacatgaatga |
48023517 |
T |
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