View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_33 (Length: 257)
Name: NF0960_low_33
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_33 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 43002730 - 43002490
Alignment:
| Q |
17 |
atggacatcatcatcctattaggtaacgaccgacaacaccgatctttaacaaataccagcaacttttattttataacagaaaatacaaacaacttatttc |
116 |
Q |
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| T |
43002730 |
atggacaacatcatcctattaggtaacgaccgacaacaccgatctttaacaaataccagcaacttttattttataacagaaaatacaaacaacttatttc |
43002631 |
T |
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| Q |
117 |
tttaatccaaagattcaattgacacaaaaagatatcaagttaagcattcttaagaaattccatgacatacatgttgaaagcacaacatgcaatttgaaat |
216 |
Q |
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| T |
43002630 |
attaatccaaagatacaattgacacaaaaagatatcaagttaagcattcttaagaaattccatgacatacatgttgaaagcacaacatgcaatttgaaat |
43002531 |
T |
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| Q |
217 |
ccttcaaatccagctcctttagctaaagcctcaaactcttt |
257 |
Q |
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| T |
43002530 |
ccttcaaatccagctcctttagctaaagcctcaaactcttt |
43002490 |
T |
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