View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0960_low_34 (Length: 256)
Name: NF0960_low_34
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 40466264 - 40466377
Alignment:
| Q |
1 |
tgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttgacttgttctgtgaggcact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40466264 |
tgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttgacttgttctgtgaggcact |
40466363 |
T |
|
| Q |
101 |
tgtagagatagaaa |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40466364 |
tgtagagatagaaa |
40466377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 40489246 - 40489359
Alignment:
| Q |
1 |
tgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttgacttgttctgtgaggcact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40489246 |
tgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttgacttgttctgtgaggcact |
40489345 |
T |
|
| Q |
101 |
tgtagagatagaaa |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40489346 |
tgtagagatagaaa |
40489359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 40472600 - 40472711
Alignment:
| Q |
1 |
tgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttgacttgttctgtgaggcact |
100 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| ||||| || || |||||| ||| |
|
|
| T |
40472600 |
tgttcaaaactcttttggaagatgttgagaacgaatatggatatagaaacgatggtcctctatggtttccttgtgacgttgatttattttgtgagatact |
40472699 |
T |
|
| Q |
101 |
tgtagagataga |
112 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
40472700 |
tgtagatataga |
40472711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 40480377 - 40480456
Alignment:
| Q |
3 |
tttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttga |
82 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| ||||| |
|
|
| T |
40480377 |
tttaaaactcttttagaagatgttgacaatgaatatggatataaaagtgatggtcctctatggcttccttgtgacgttga |
40480456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University