View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_35 (Length: 251)
Name: NF0960_low_35
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_35 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 24286148 - 24285908
Alignment:
| Q |
11 |
cacagacaagaattattatctaaaatgttacgccaaagcaatctttggttggtaatctattatgaaatagacgccaagcaaacgttaattctatagagga |
110 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24286148 |
cacaaacaagaattattatctaaaatgttatgccaaagcaatctttggttggtaatctattatgaaatagacgccaagcaaacgttaattctatagagga |
24286049 |
T |
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| Q |
111 |
cggaagcatagaaatcaattccaccgcaaacaaggaaatccaagtagtagtgaattttcctatagcctctaaccaagacgtgttcaaattctaaaaattg |
210 |
Q |
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| T |
24286048 |
cggaagcatagaaatcaattccaccgcaaacaaggaaatccaagtagtagtgaattttcttatagcctctaaccaagacgtgttcaaattctaaaaattg |
24285949 |
T |
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| Q |
211 |
gacataaactcagcaaggagaggtagtgtccaagattaccc |
251 |
Q |
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| T |
24285948 |
gacataaactcagcaaggagaggtagtgtccaagattaccc |
24285908 |
T |
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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 44889443 - 44889528
Alignment:
| Q |
11 |
cacagacaagaattattatctaaaatgttacgccaaagcaat----ctttggttggtaatctattatgaaatagacgccaagcaaa |
92 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44889443 |
cacagacaagaattattatctaaaacgttgcgccaaagcaagttacctttggttggtaatctattatgaaatagacgccaagcaaa |
44889528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 29642444 - 29642485
Alignment:
| Q |
51 |
atctttggttggtaatctattatgaaatagacgccaagcaaa |
92 |
Q |
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| T |
29642444 |
atctttggttggtaatctattccgaaatagacgccaagcaaa |
29642485 |
T |
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