View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0960_low_4 (Length: 542)

Name: NF0960_low_4
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0960_low_4
NF0960_low_4
[»] chr4 (10 HSPs)
chr4 (1-519)||(55907601-55908119)
chr4 (385-487)||(661854-661956)
chr4 (310-435)||(3437630-3437755)
chr4 (317-417)||(547943-548043)
chr4 (321-434)||(1755485-1755598)
chr4 (138-273)||(547773-547908)
chr4 (389-436)||(571330-571377)
chr4 (135-245)||(1527362-1527472)
chr4 (397-436)||(553767-553806)
chr4 (382-478)||(8186326-8186422)
[»] chr2 (3 HSPs)
chr2 (1-517)||(1036539-1037055)
chr2 (438-517)||(1036345-1036424)
chr2 (384-434)||(45244859-45244909)
[»] chr8 (9 HSPs)
chr8 (66-258)||(17627169-17627361)
chr8 (18-175)||(44244710-44244857)
chr8 (386-486)||(14004140-14004240)
chr8 (384-500)||(17642880-17642996)
chr8 (389-478)||(17635623-17635712)
chr8 (386-486)||(5766564-5766664)
chr8 (390-434)||(32151969-32152013)
chr8 (389-436)||(21236154-21236201)
chr8 (405-443)||(18314640-18314678)
[»] chr7 (2 HSPs)
chr7 (384-439)||(10615708-10615763)
chr7 (382-496)||(7977866-7977980)
[»] chr1 (3 HSPs)
chr1 (387-469)||(7555196-7555278)
chr1 (391-451)||(33161200-33161260)
chr1 (384-436)||(9581685-9581737)
[»] chr6 (8 HSPs)
chr6 (384-439)||(6417087-6417142)
chr6 (384-436)||(7132300-7132352)
chr6 (391-434)||(6395539-6395582)
chr6 (385-436)||(7135224-7135275)
chr6 (385-436)||(7138147-7138198)
chr6 (391-436)||(6423907-6423952)
chr6 (391-431)||(6427183-6427223)
chr6 (408-436)||(9412143-9412171)
[»] chr3 (1 HSPs)
chr3 (380-439)||(13469655-13469714)
[»] scaffold1155 (1 HSPs)
scaffold1155 (397-478)||(1853-1934)
[»] scaffold0345 (1 HSPs)
scaffold0345 (397-478)||(8282-8363)
[»] scaffold0105 (1 HSPs)
scaffold0105 (397-478)||(30616-30697)
[»] chr5 (1 HSPs)
chr5 (389-430)||(20477455-20477496)


Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 55908119 - 55907601
Alignment:
Q  1 tcaccaacgagccaatgaagtttgaaccaatgttgtcatggcttccatttgttctccatctaacggatagagacttcaaagtaggtctctcacggatagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55908119 tcaccaacgagccaatgaagtttgaaccaatgttgtcatggcttccatttgttctccatctaacggatagagacttcaaagtaggtctctcacggatagc 55908020  T
Q  101 agaagcgacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  55908019 agaagcgacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcgtct 55907920  T
Q  201 atattataataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907919 atattataataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaag 55907820  T
Q  301 gattactactactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgag 400  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  55907819 gattactactactgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaacaaatgag 55907720  T
Q  401 agaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaa 500  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907719 agaattcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaa 55907620  T
Q  501 ggtatttggcagagaagtg 519  Q
    |||||||||||||||||||    
T  55907619 ggtatttggcagagaagtg 55907601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 385 - 487
Target Start/End: Original strand, 661854 - 661956
Alignment:
Q  385 tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagt 484  Q
    ||||| ||||||||||||| || ||||||||||||| ||||||||||||||| || ||| ||||||| ||| | | |||||||||||||||||| || ||    
T  661854 tgttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgt 661953  T
Q  485 gat 487  Q
    |||    
T  661954 gat 661956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 435
Target Start/End: Complemental strand, 3437755 - 3437630
Alignment:
Q  310 tactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaa 409  Q
    |||||| ||||||| ||||||| ||||||||||||||||| |||||||  || |    || ||| ||| || ||| |||||||||| ||||||| |||||    
T  3437755 tactaaggtcaagtacttcaagtaaagggaagcaatcagagataagaattagatagcggtcatggagaaaatcaaagttggaacaactgagagaggtcaa 3437656  T
Q  410 agttgtaatattttgggagaaagctc 435  Q
    ||||||||| ||||||||||||||||    
T  3437655 agttgtaatcttttgggagaaagctc 3437630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 317 - 417
Target Start/End: Original strand, 547943 - 548043
Alignment:
Q  317 gtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgta 416  Q
    |||||||||||||||||||||||||||| |||| |||  ||| ||||| ||||||   |||||| |||||||||||||| |||||||  |||||||||||    
T  547943 gtcaagttcttcaaggaaagggaagcaaccagatatacaaaccaggtcgttgttacagagagaatcaatgttggaacaagtgagagagttcaaagttgta 548042  T
Q  417 a 417  Q
    |    
T  548043 a 548043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 434
Target Start/End: Original strand, 1755485 - 1755598
Alignment:
Q  321 agttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgtaatat 420  Q
    ||||||||||| |||||||| || |||| ||| || |  | ||||||| |||| |||  ||| |||||||||||  ||||||| |||||||||||||| |    
T  1755485 agttcttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatct 1755584  T
Q  421 tttgggagaaagct 434  Q
    |||| |||||||||    
T  1755585 tttgagagaaagct 1755598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 273
Target Start/End: Original strand, 547773 - 547908
Alignment:
Q  138 aacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcggagct 237  Q
    ||||||| || |||||| |||||||||||| | | ||| || || |||||  | ||||||| |||||  |||| ||| || | |||||||||||||||||    
T  547773 aacatcacaaactcttcgagaaactcacaactttgacacaagtgaaaaagcaatgagtcatttatatagtaatgaccagataaattaaccttgcggagct 547872  T
Q  238 taggaagcaccattgccatagtctttacccaaacat 273  Q
    |||||||| |  ||| ||||| |||||||| |||||    
T  547873 taggaagcgctgttgacatagcctttaccccaacat 547908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 571330 - 571377
Alignment:
Q  389 ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 436  Q
    ||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  571330 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcg 571377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 245
Target Start/End: Complemental strand, 1527472 - 1527362
Alignment:
Q  135 ttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcgga 234  Q
    |||||||||| || ||||| ||||||  ||||||| ||||| || ||||||||  ||||||||| |  ||  | || ||| ||||||||||||||| |||    
T  1527472 ttcaacatcaaaatctcttgaagaaatacacaatttttacacaagtgcaaaagcaacgagtcatttgcatagtgatgaccagagagattaaccttgtgga 1527373  T
Q  235 gcttaggaagc 245  Q
    |||||||||||    
T  1527372 gcttaggaagc 1527362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 436
Target Start/End: Original strand, 553767 - 553806
Alignment:
Q  397 tgagagaagtcaaagttgtaatattttgggagaaagctcg 436  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  553767 tgagagaggtcaaagttgtaatgttttgggagaaagctcg 553806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 478
Target Start/End: Complemental strand, 8186422 - 8186326
Alignment:
Q  382 caatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 478  Q
    |||||||||||||  |||| || |||||||||||||||||| |||||| | |||| || ||| | || || ||| | |||| ||| |||||||||||    
T  8186422 caatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgag 8186326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 1037055 - 1036539
Alignment:
Q  1 tcaccaacgagccaatgaagtttgaaccaatgttgtcatggcttccatttgttctccatctaacggatagagacttcaaagtaggtctctcacggatagc 100  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  1037055 tcaccaacgagccaatgaagtttgcaccaatgttgtcatgccttccatttgttctccatctaacaaatagagacttcaaagtaggtctctcacggatagc 1036956  T
Q  101 agaagcgacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatct 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1036955 agaagcgacatcatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcgtct 1036856  T
Q  201 atattataataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036855 atattataataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaag 1036756  T
Q  301 gattactactactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgag 400  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||  || ||||||||||||||||||||||||    
T  1036755 gattactactattgaagtcaagttcttcaaggaaaggaaagcaatcagaaataagaacaagatcattgttacatatagaagcaatgttggaacaaatgag 1036656  T
Q  401 agaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036655 agaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaa 1036556  T
Q  501 ggtatttggcagagaag 517  Q
    ||||||||| |||||||    
T  1036555 ggtatttggtagagaag 1036539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 438 - 517
Target Start/End: Complemental strand, 1036424 - 1036345
Alignment:
Q  438 aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaag 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036424 aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaag 1036345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 45244909 - 45244859
Alignment:
Q  384 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagct 434  Q
    |||||| ||||||||||||| |||||| || ||||| ||||||||||||||    
T  45244909 atgttgtaacaaatgagagaggtcaaatttctaatagtttgggagaaagct 45244859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 66 - 258
Target Start/End: Complemental strand, 17627361 - 17627169
Alignment:
Q  66 gatagagacttcaaagtaggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcac 165  Q
    |||| |||| ||||||  |||||||||||||| |||||||| |  ||||||  ||||||  ||| | | || |||| || ||||||||| ||||||||||    
T  17627361 gataaagacctcaaagatggtctctcacggatggcagaagcaatgccatcacaagttaaggatgaatacttgaacaacacaacctcttcgagaaactcac 17627262  T
Q  166 aattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcggagcttaggaagcaccattgccatag 258  Q
    |||| ||||| || ||||||||| | ||||||  |||||  |||| ||  || | ||| | |||||||||||||||||||||||||| |||||    
T  17627261 aatttttacacaagtgcaaaagtaatgagtcacttatatcgtaatgacgagataaatttatcttgcggagcttaggaagcaccattgacatag 17627169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 44244710 - 44244857
Alignment:
Q  18 aagtttgaaccaatgttgtcatggcttccatttgttctccatctaacggatagagacttcaaagtaggtctctcacggatagcagaagcgacaccatcat 117  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||         ||||||||| |||| ||||||||   ||| |||||||| |  ||| |||    
T  44244710 aagtgtgaactaatgttgtcatagcttccatttgatctccat---------agagacttcgaagttggtctctcgttgatggcagaagcaatgccaacat 44244800  T
Q  118 gagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttaca 175  Q
    |||||| |  ||  |||||||||||| |||||||||||||||||||||||||||||||    
T  44244801 gagttagag-tgagcatttcaacatcctaacctcttcaagaaactcacaattcttaca 44244857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 486
Target Start/End: Original strand, 14004140 - 14004240
Alignment:
Q  386 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 485  Q
    |||||||||||| || || |||||||||||||| || || ||||||||||| || ||| |||| || | ||| ||||||||||| ||||||||||| |||    
T  14004140 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtg 14004239  T
Q  486 a 486  Q
    |    
T  14004240 a 14004240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 384 - 500
Target Start/End: Complemental strand, 17642996 - 17642880
Alignment:
Q  384 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaag 483  Q
    |||| ||||||| ||||||| ||||||||||||||||| |||||||||||| |||| ||| | | ||| ||| |  | ||||||||||||||||| || |    
T  17642996 atgtgggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatg 17642897  T
Q  484 tgatatttaatggaaaa 500  Q
    |||  || |||||||||    
T  17642896 tgagtttcaatggaaaa 17642880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 17635712 - 17635623
Alignment:
Q  389 ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 478  Q
    ||||||| ||||||| |||||||||||||||||  |||||||||||||||| ||| |||  || ||| |  |||||||||| ||||||||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgag 17635623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 486
Target Start/End: Complemental strand, 5766664 - 5766564
Alignment:
Q  386 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 485  Q
    |||||||||||| || || |||||||||||||| || || ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  5766664 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 5766565  T
Q  486 a 486  Q
    |    
T  5766564 a 5766564  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 32151969 - 32152013
Alignment:
Q  390 gaacaaatgagagaagtcaaagttgtaatattttgggagaaagct 434  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagct 32152013  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 21236154 - 21236201
Alignment:
Q  389 ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 436  Q
    ||||||| ||||||| |||||||||||| ||||||||||||| |||||    
T  21236154 ggaacaattgagagatgtcaaagttgtagtattttgggagaatgctcg 21236201  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 443
Target Start/End: Complemental strand, 18314678 - 18314640
Alignment:
Q  405 gtcaaagttgtaatattttgggagaaagctcgtaagcca 443  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  18314678 gtcaaagttgtaatattttgagagaaaactcgtaagcca 18314640  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 10615708 - 10615763
Alignment:
Q  384 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa 439  Q
    |||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  10615708 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaa 10615763  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 496
Target Start/End: Original strand, 7977866 - 7977980
Alignment:
Q  382 caatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcga 481  Q
    ||||||| |||||  |||| || |||||||||| |||||||||||||||| || | || |||  ||| || ||| |||| ||||||||||||||||| ||    
T  7977866 caatgttagaacatttgagtgaggtcaaagttgcaatattttgggagaaaactggcaacccataagccggaatggtagggtggttggagagattgagtga 7977965  T
Q  482 agtgatatttaatgg 496  Q
     ||||| || |||||    
T  7977966 cgtgattttcaatgg 7977980  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 469
Target Start/End: Original strand, 7555196 - 7555278
Alignment:
Q  387 ttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttgga 469  Q
    ||||||||| |||| || || ||||||||||||||||||||||||||||| || ||| | || |||||| | |||||||||||    
T  7555196 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttgga 7555278  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 451
Target Start/End: Original strand, 33161200 - 33161260
Alignment:
Q  391 aacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggg 451  Q
    ||||| ||||||||||||||||| ||||  |||||||||||| ||| |||||| |||||||    
T  33161200 aacaagtgagagaagtcaaagttttaatggtttgggagaaagttcgcaagccattagcggg 33161260  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 9581685 - 9581737
Alignment:
Q  384 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 436  Q
    ||||| |||||||||||||| ||||| |||||||| |||  ||||||||||||    
T  9581685 atgttcgaacaaatgagagatgtcaacgttgtaatctttacggagaaagctcg 9581737  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 6417087 - 6417142
Alignment:
Q  384 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa 439  Q
    |||| ||||||| ||||||| |||||||||||| | ||||||||||||||||||||    
T  6417087 atgtgggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaa 6417142  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 7132300 - 7132352
Alignment:
Q  384 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 436  Q
    ||||||||||||  |||||| | |||||||||||| |||||||||||||||||    
T  7132300 atgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg 7132352  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 434
Target Start/End: Original strand, 6395539 - 6395582
Alignment:
Q  391 aacaaatgagagaagtcaaagttgtaatattttgggagaaagct 434  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||    
T  6395539 aacaactgagagaggtcaaagttgtaatattttgggagagagct 6395582  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 436
Target Start/End: Original strand, 7135224 - 7135275
Alignment:
Q  385 tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 436  Q
    |||||||||||  |||||| | |||||||||||| |||||||||||||||||    
T  7135224 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg 7135275  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 436
Target Start/End: Original strand, 7138147 - 7138198
Alignment:
Q  385 tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 436  Q
    |||||||||||  |||||| | |||||||||||| |||||||||||||||||    
T  7138147 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg 7138198  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 6423907 - 6423952
Alignment:
Q  391 aacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 436  Q
    ||||| ||||||| ||||||||||| || |||||||||||||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcg 6423952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 431
Target Start/End: Original strand, 6427183 - 6427223
Alignment:
Q  391 aacaaatgagagaagtcaaagttgtaatattttgggagaaa 431  Q
    ||||| ||||| | |||||||||||||||||||||||||||    
T  6427183 aacaagtgagaaaggtcaaagttgtaatattttgggagaaa 6427223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 436
Target Start/End: Original strand, 9412143 - 9412171
Alignment:
Q  408 aaagttgtaatattttgggagaaagctcg 436  Q
    |||||||||||||||||||||||||||||    
T  9412143 aaagttgtaatattttgggagaaagctcg 9412171  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 13469714 - 13469655
Alignment:
Q  380 agcaatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa 439  Q
    |||||||| ||||||| ||||||| ||||  |||||| | ||||||||||||||||||||    
T  13469714 agcaatgtgggaacaagtgagagaggtcagcgttgtattcttttgggagaaagctcgtaa 13469655  T

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Target: scaffold1155 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 478
Target Start/End: Complemental strand, 1934 - 1853
Alignment:
Q  397 tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 478  Q
    |||||| | |||||||||||||||||||||| ||| |||| || |||   ||||| || || ||||||| ||||||||||||    
T  1934 tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag 1853  T

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Target: scaffold0345 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 478
Target Start/End: Original strand, 8282 - 8363
Alignment:
Q  397 tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 478  Q
    |||||| | |||||||||||||||||||||| ||| |||| || |||   ||||| || || ||||||| ||||||||||||    
T  8282 tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag 8363  T

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Target: scaffold0105 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 478
Target Start/End: Complemental strand, 30697 - 30616
Alignment:
Q  397 tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 478  Q
    |||||| | |||||||||||||||||||||| ||| |||| || |||   ||||| || || ||||||| ||||||||||||    
T  30697 tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag 30616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Complemental strand, 20477496 - 20477455
Alignment:
Q  389 ggaacaaatgagagaagtcaaagttgtaatattttgggagaa 430  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||    
T  20477496 ggaacaactgagagaggtcaaagttttaatattttgggagaa 20477455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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