View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_5 (Length: 536)
Name: NF0960_low_5
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 44 - 296
Target Start/End: Complemental strand, 4246729 - 4246481
Alignment:
| Q |
44 |
taatagatagatctatacacataccatttaaagaaaaatgagcaaagagagatccccacataccaaatggagacgaggacgagatttatacataacaagt |
143 |
Q |
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| T |
4246729 |
taatagatagatctatacacataccatttaaagaaaaatgagcaaagagagatccccacataccaaatggagacgaggacgagatttatacataacaagt |
4246630 |
T |
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| Q |
144 |
cgagagataaataagacaacaacatgttttacatatactcaatgaaaagagaagagacggctagggtttctctcacagaaatatgatgcagnnnnnnnnn |
243 |
Q |
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| T |
4246629 |
cgagagataaataagacaacaacatgttttacatatactcaatgaaaagagaagagacgactaggatttctctcacagaaatatgatgcag----tatat |
4246534 |
T |
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| Q |
244 |
nnnnnaccgcttctcaagtttgactaaacaatataaagtaggatttaaaacat |
296 |
Q |
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| T |
4246533 |
atataaccgcttctcaagtttgactgaacaatataaagtagggtttaaaacat |
4246481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 288 - 508
Target Start/End: Complemental strand, 4246072 - 4245852
Alignment:
| Q |
288 |
ttaaaacattactatcttaaacaattgccaaatcaataaatatatagccttctgttgagtaaaaaagttgttaagcctttacaattatacacacactgta |
387 |
Q |
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| T |
4246072 |
ttaaaacattactatcttaaacaatggacaaatcaataaatatatagccttctgttgagtaaaaaagttgttaagcctttacaattatacacacactgta |
4245973 |
T |
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| Q |
388 |
ctggagaagttaggaagcatagagtagactatatgcttgatttggaatgaagtnnnnnnntctaccaagactttgcatgaacaataaaatttctcataaa |
487 |
Q |
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| T |
4245972 |
ctggagaagttaggaagcatagagtagactatatgcttgatttggaatgaagtaaacaaatctaccaagactctgcatgaacaataaaatttctcataaa |
4245873 |
T |
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| Q |
488 |
tagattaatgttatatatact |
508 |
Q |
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| T |
4245872 |
tagattaatgttatatatact |
4245852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 453 - 505
Target Start/End: Complemental strand, 4252254 - 4252202
Alignment:
| Q |
453 |
caagactttgcatgaacaataaaatttctcataaatagattaatgttatatat |
505 |
Q |
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| T |
4252254 |
caagactttgcatgaacaataaaatttctcattaataaattgatgttgtatat |
4252202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 4252371 - 4252338
Alignment:
| Q |
402 |
aagcatagagtagactatatgcttgatttggaat |
435 |
Q |
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| T |
4252371 |
aagcatagagtagactatatgcttgatttggaat |
4252338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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