View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0960_low_6 (Length: 530)
Name: NF0960_low_6
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0960_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 29 - 456
Target Start/End: Original strand, 40822640 - 40823067
Alignment:
| Q |
29 |
cattctgctcctcgggtaactcaatatgaaacaccaccgtctaaaaagaattttaaacacttttttgtttccttttatcaaagaatccttacatgaatag |
128 |
Q |
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| T |
40822640 |
cattctgctcctcgggtaactcaatatgaaacaccaccgtctaaaaagaattttaagcacttttttgtttccttttatcaaagaatccttacatgaatag |
40822739 |
T |
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| Q |
129 |
ctgtgaaattgactattgtgactaaagctgatgttctcacaatttggtcactcaacatttcaaagataatgttgttattgcaaattttatggcatgttat |
228 |
Q |
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| T |
40822740 |
ctgtgaaattgactattgtgactaaagctgatgttctcacaatttggtcactcaacatttcaaagataatgttgttattgcaaattttatggcatgttat |
40822839 |
T |
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| Q |
229 |
gaatgaaaagggatcacttcccatctcattaaactcccacgaactagaaaaacaacagtagaatagtagtagctctttcnnnnnnntagcagctaaaatt |
328 |
Q |
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| T |
40822840 |
gaatgaaaagggatcacttcccatctcattaaactcccacgaactagaaaaacaacagtagaatagtagtagctctttcaaaaaaatagcagctaaaatt |
40822939 |
T |
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| Q |
329 |
ttgatcctccccatttcatttatttcgtagggagtctcccgtatgaaacaataattgtgttgcttatgaccgttggcagttgagtgccaacatacttgag |
428 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40822940 |
ttgatcctccccatttcatttattttgtagggagtctcccgtatgaaacaataattgtgttgcttatgaccgttggcagttgggtgccaacatacttgag |
40823039 |
T |
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| Q |
429 |
atgtaagttgtttatgtgctgtctctgc |
456 |
Q |
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| T |
40823040 |
atgtaagttgtttatgtgatgtctctgc |
40823067 |
T |
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