View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0960_low_7 (Length: 483)

Name: NF0960_low_7
Description: NF0960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0960_low_7
NF0960_low_7
[»] chr7 (9 HSPs)
chr7 (6-483)||(48654077-48654549)
chr7 (380-483)||(10289397-10289501)
chr7 (284-422)||(22077623-22077758)
chr7 (398-456)||(12196802-12196860)
chr7 (380-456)||(49170493-49170570)
chr7 (270-378)||(15874046-15874156)
chr7 (270-378)||(21491605-21491717)
chr7 (380-430)||(12911920-12911970)
chr7 (292-326)||(41874437-41874471)
[»] chr2 (6 HSPs)
chr2 (13-412)||(28267398-28267793)
chr2 (13-377)||(12774658-12775024)
chr2 (307-483)||(32735438-32735613)
chr2 (380-456)||(41340860-41340936)
chr2 (402-456)||(22403703-22403757)
chr2 (307-343)||(29270701-29270737)
[»] chr1 (8 HSPs)
chr1 (56-360)||(18473834-18474133)
chr1 (398-483)||(21264826-21264911)
chr1 (270-376)||(9537465-9537571)
chr1 (398-456)||(8421530-8421588)
chr1 (284-413)||(35762175-35762303)
chr1 (380-431)||(43407973-43408025)
chr1 (307-378)||(37667296-37667369)
chr1 (36-88)||(33007968-33008019)
[»] chr6 (6 HSPs)
chr6 (155-483)||(13777096-13777420)
chr6 (6-159)||(13773663-13773815)
chr6 (286-411)||(24992418-24992538)
chr6 (270-378)||(34636218-34636328)
chr6 (307-378)||(23260724-23260797)
chr6 (307-378)||(32450409-32450482)
[»] chr5 (3 HSPs)
chr5 (49-156)||(42861091-42861198)
chr5 (270-378)||(536761-536871)
chr5 (270-436)||(4558081-4558246)
[»] chr3 (5 HSPs)
chr3 (380-483)||(7337300-7337404)
chr3 (360-456)||(11968081-11968173)
chr3 (270-454)||(16975211-16975395)
chr3 (270-378)||(5004829-5004939)
chr3 (270-378)||(46404671-46404781)
[»] scaffold0413 (1 HSPs)
scaffold0413 (307-446)||(8806-8944)
[»] chr4 (4 HSPs)
chr4 (270-378)||(28969292-28969400)
chr4 (300-412)||(41868570-41868678)
chr4 (380-431)||(40458887-40458939)
chr4 (380-428)||(69235-69283)
[»] chr8 (1 HSPs)
chr8 (398-453)||(35839060-35839115)


Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 6 - 483
Target Start/End: Original strand, 48654077 - 48654549
Alignment:
Q  6 ctccaagaatatatcgccacatatatgctaaaaataacactacaagcatttttctccggtaaataatatagtcacatatatactataataaaattaaaca 105  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48654077 ctccaagaatatatcaccacatatatgctaaaaataacaatacaagcatttttctccggtaaataatatagtcacatatatactataataaaattaaaca 48654176  T
Q  106 tttattaatttatccaggaagaatttcagaaaccatataatcattatttctaagatttataccctttttctaatactcacatcatcatattttttatctc 205  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  48654177 tttattaatttatccaggaagaatttcagcaaccatataatcattatttctaagatttataccctttttctaatactcacatcatcatatttttcctctc 48654276  T
Q  206 tttggtttttcaaaacaaattctaacatttatttcctacatnnnnnnnnnncaaataaagcataaacttttgtaaactgttaaatattaccacctaaata 305  Q
    |||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48654277 tttggtttttcaaaacaaattctaacatttatttcctacat--cacaaaaacaaataaagcataaacttttgtaaactgttaaatattaccacctaaata 48654374  T
Q  306 tatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttaattagtatggacatat-ggaaaaaagc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||| ||| || ||||| |    
T  48654375 tatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtac----ttagtatggacgtatggggaaaaaac 48654470  T
Q  405 ccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaaactcgatgcacatcattcctcgctccactaa 483  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  48654471 ccttacctcgaaagcttttgttcctagccgaactctaaaccacctcaaactcgatacacatcattcctcactccactaa 48654549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 380 - 483
Target Start/End: Original strand, 10289397 - 10289501
Alignment:
Q  380 ttagtatggacatatgga-aaaaagcccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaaactcgatgcacatcattcctcgctcc 478  Q
    ||||||||||| |||||  ||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  10289397 ttagtatggacgtatggggaaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactcgatacacatcattcctcgctcc 10289496  T
Q  479 actaa 483  Q
    |||||    
T  10289497 actaa 10289501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 422
Target Start/End: Complemental strand, 22077758 - 22077623
Alignment:
Q  284 gttaaatattaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttaattag 383  Q
    ||||||| ||||||  ||||| |||||||||||||||||||||   || |||||||||| | ||| ||||||||| ||||||||||||||||    ||||    
T  22077758 gttaaattttaccatataaatttatattttagttgtttttcttcttaacagacaagaatctctacctctaattcataacatcatcctagtac----ttag 22077663  T
Q  384 tatggacatat-ggaaaaaagcccttacctcgaaagcttt 422  Q
    |||| |||||| |||||||||||||||||||  |||||||    
T  22077662 tatgaacatatgggaaaaaagcccttacctcataagcttt 22077623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 398 - 456
Target Start/End: Original strand, 12196802 - 12196860
Alignment:
Q  398 aaaaagcccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaaactc 456  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||||| ||||||||    
T  12196802 aaaaagcccttaccttgtaagtttttcttcctagccgaactctaaaccacctcaaactc 12196860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 456
Target Start/End: Original strand, 49170493 - 49170570
Alignment:
Q  380 ttagtatggacatatgga-aaaaagcccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaaactc 456  Q
    ||||||||||| |||||  ||||| |||||||||||| |||||||||| |||| ||||||||||||||| ||||||||    
T  49170493 ttagtatggacgtatggggaaaaaacccttacctcgagagcttttctttctagtcgaactctaaaccacctcaaactc 49170570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 378
Target Start/End: Original strand, 15874046 - 15874156
Alignment:
Q  270 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcat 367  Q
    ||||||| ||||  ||||||| ||||||  | |||  ||||||||||||||||  ||||| ||| | |||||||| | ||| ||||||||| ||||| ||    
T  15874046 aacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacataat 15874145  T
Q  368 cctagtactta 378  Q
    |||||||||||    
T  15874146 cctagtactta 15874156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 378
Target Start/End: Original strand, 21491605 - 21491717
Alignment:
Q  270 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt----tctttccaaaagacaagaatttgtacttctaattcacaacatc 365  Q
    ||||||| ||||  ||||||| ||||||  |||||  ||||||||||| ||||    ||||| |||  ||||||||| | ||| ||||||||| ||||||    
T  21491605 aacttttataaaaggttaaattttaccatataaattcatattttagtttttttgtcttcttttcaaccgacaagaatctctacctctaattcataacatc 21491704  T
Q  366 atcctagtactta 378  Q
    |||||||||||||    
T  21491705 atcctagtactta 21491717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 12911920 - 12911970
Alignment:
Q  380 ttagtatggacatatggaaaaaagcccttacctcgaaagcttttcttccta 430  Q
    ||||||||||| ||||| ||||| |||||||||| | ||||||||||||||    
T  12911920 ttagtatggacgtatgggaaaaaacccttacctcaagagcttttcttccta 12911970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 326
Target Start/End: Complemental strand, 41874471 - 41874437
Alignment:
Q  292 ttaccacctaaatatatattttagttgtttttctt 326  Q
    ||||||| |||||||||||||||||||||||||||    
T  41874471 ttaccacttaaatatatattttagttgtttttctt 41874437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 412
Target Start/End: Original strand, 28267398 - 28267793
Alignment:
Q  13 aatatatcgccacatatat-gctaaaaataacactacaagcatttttctccggtaaataatatagtcacatatatactataataaaattaaacatttatt 111  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| | |||||||||||||    
T  28267398 aatatatagccacatatattgctaaaaataacactacaagcatttttctacaggaaataatatagtcacatatatactataatagatttaaacatttatt 28267497  T
Q  112 aatttatccaggaagaatttcagaaaccatataatcattatttctaagatttataccctttttctaatactcacatcatcatattttttatctctttggt 211  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||  ||||||||||| |||||||||||  | ||||||||    
T  28267498 aatttatccaggaagaatttcagcaaccatataatcattatttctaaaatttataccctttttacaatactcacattatcatatttttcctttctttggt 28267597  T
Q  212 ttttcaaaacaaattctaacatttatttcctacatnnnnnnnnnncaaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatatt 311  Q
    ||||||||| ||| |||||||||| ||||||| |           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28267598 ttttcaaaaaaaaatctaacatttctttccta-acatcacaaaaacaaataaagcataaacttttgcaaactgttaaatattaccacctaaatatatatt 28267696  T
Q  312 ttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttaattagtatggacatatggaaaaaagcccttacc 411  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    ||||||||||| ||||| ||||| ||||||||    
T  28267697 ttagttgtttttcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtac----ttagtatggacgtatgggaaaaaacccttacc 28267792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 12774658 - 12775024
Alignment:
Q  13 aatatatcgccacatatatgctaaaaataacactacaagcatttttctccggtaaataatatagtcacatatatactataataaaattaaacatttatta 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||| |||||||||    
T  12774658 aatatatagccacatatatgctaaaaataacactacaagcatttttctccaggaaataatatagtcacatatatactatgataaatttaagcatttatta 12774757  T
Q  113 atttatccaggaagaatttcagaaaccatataatcattatttctaagatttataccctttttctaatactcac-atcatcatattttttatctctttggt 211  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| || |||||||||||  | ||||||||    
T  12774758 atttatccaggaagaatttcagcaaccatataatcattatttctaaaatttataccctttttataatactcacaattatcatatttttcctttctttggt 12774857  T
Q  212 ttttcaaaacaaattctaacatttatttcctacatnnnnnnnnnncaaataaa----gcataaacttttgtaaactgttaaatattaccacctaaatata 307  Q
    ||||||||  ||| |||||||||| ||| ||| |           ||||||||    ||||||  |||||||||||||||||||||||||||||||||||    
T  12774858 ttttcaaa--aaaatctaacatttcttttcta-acatcacaaaaacaaataaagcatgcataattttttgtaaactgttaaatattaccacctaaatata 12774954  T
Q  308 tattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtactt 377  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12774955 tattttagttgtttttctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtactt 12775024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 307 - 483
Target Start/End: Original strand, 32735438 - 32735613
Alignment:
Q  307 atattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttaattagtatggacatatgga-aaaaag 403  Q
    ||||||||||||||||  ||||| ||| |||||||||| | ||| ||||||||| ||||| ||||||| |||||    ||| | || |||||  ||||||    
T  32735438 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagcactta----gtaagaacgtatggggaaaaag 32735533  T
Q  404 cccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaaactcgatgcacatcattcctcgctccactaa 483  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  32735534 cccttacctcgagagcttttcttcctagccgaactctaaaccacctcaaactcgatacacatcattcctcgctccactaa 32735613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 380 - 456
Target Start/End: Original strand, 41340860 - 41340936
Alignment:
Q  380 ttagtatggacatatggaaaaaagcccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaaactc 456  Q
    ||||||||||| ||||| ||||||||||||||| || ||||||||||||||| |||||||||||| || ||||||||    
T  41340860 ttagtatggacgtatgggaaaaagcccttacctagagagcttttcttcctaggcgaactctaaacaacctcaaactc 41340936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 402 - 456
Target Start/End: Complemental strand, 22403757 - 22403703
Alignment:
Q  402 agcccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaaactc 456  Q
    |||||||||||||| | ||||||||||||||||||||||||||||| | ||||||    
T  22403757 agcccttacctcgagatcttttcttcctagccgaactctaaaccaccttaaactc 22403703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 29270737 - 29270701
Alignment:
Q  307 atattttagttgtttttctttccaaaagacaagaatt 343  Q
    |||||||| |||||||||||| |||||||||||||||    
T  29270737 atattttaattgtttttcttttcaaaagacaagaatt 29270701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 56 - 360
Target Start/End: Original strand, 18473834 - 18474133
Alignment:
Q  56 tttctccggtaaataatatagtcacatatatactataataaaattaaacatttattaatttatccaggaagaatttcagaaaccatataatcattatttc 155  Q
    ||||||||| ||||||||  |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||    
T  18473834 tttctccgggaaataata--gtcacatatatactataataaaattaaacattt--taatttatccaggaagaatttcagcaaccatataatcattatttc 18473929  T
Q  156 taagatttataccctttttctaatactcacatcatcatattttttatctctttggtttttc-aaaacaaattctaacatttatttcctacatnnnnnnnn 254  Q
    ||||||||||| ||||||| |||||||||||| |||||||||||  | ||||||||||||| ||||||||||||||||||| ||||||||||            
T  18473930 taagatttatatcctttttataatactcacattatcatatttttcctttctttggtttttcaaaaacaaattctaacatttctttcctacat--cacaaa 18474027  T
Q  255 nncaaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaa 354  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18474028 aacaaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatattttaattgtttttctttccaaaagacaagaatttgtacttctaa 18474127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 398 - 483
Target Start/End: Original strand, 21264826 - 21264911
Alignment:
Q  398 aaaaagcccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaaactcgatgcacatcattcctcgctccactaa 483  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  21264826 aaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactcgatacacatcattcctcgctccactaa 21264911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 376
Target Start/End: Original strand, 9537465 - 9537571
Alignment:
Q  270 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcc 369  Q
    ||||||| ||||  ||||||| |||| |  ||||| ||||||||| |||||||||||  ||| |||||||||| | ||| ||||||||| ||||||||||    
T  9537465 aacttttataaaaggttaaattttacaatataaatttatattttacttgtttttcttctcaacagacaagaatctatacctctaattcataacatcatcc 9537564  T
Q  370 tagtact 376  Q
    |||||||    
T  9537565 tagtact 9537571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 456
Target Start/End: Complemental strand, 8421588 - 8421530
Alignment:
Q  398 aaaaagcccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaaactc 456  Q
    ||||||||||||||| || |||||||||| |||| ||||||||||||||| ||||||||    
T  8421588 aaaaagcccttaccttgagagcttttctttctagtcgaactctaaaccacctcaaactc 8421530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 413
Target Start/End: Original strand, 35762175 - 35762303
Alignment:
Q  284 gttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttaatt 381  Q
    ||||||| ||||||  |||||  ||||||||||||||||  ||||| ||| | |||||||| | ||| ||||||||| ||||| ||||||||||    ||    
T  35762175 gttaaattttaccatataaattcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacataatcctagtac----tt 35762270  T
Q  382 agtatggacatat-ggaaaaaagcccttacctc 413  Q
    ||||||||| ||| || ||||||||||||||||    
T  35762271 agtatggacgtatggggaaaaagcccttacctc 35762303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 43407973 - 43408025
Alignment:
Q  380 ttagtatggacatatgga-aaaaagcccttacctcgaaagcttttcttcctag 431  Q
    ||||||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  43407973 ttagtatggacgtatggggaaaaagcccttacctcgagagcttttcttcctag 43408025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 37667296 - 37667369
Alignment:
Q  307 atattttagttgttt--ttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtactta 378  Q
    |||||||||||||||  |||||| ||| |||||||||| | ||| ||||||||| ||||| |||||| ||||||    
T  37667296 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctattactta 37667369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 33007968 - 33008019
Alignment:
Q  36 aaaataacactacaagcatttttctccggtaaataatatagtcacatatatac 88  Q
    |||||||||| ||||| |||||||||| | |||||||||||| ||||||||||    
T  33007968 aaaataacaccacaagtatttttctccaggaaataatatagt-acatatatac 33008019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 8e-99; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 155 - 483
Target Start/End: Original strand, 13777096 - 13777420
Alignment:
Q  155 ctaagatttataccctttttctaatactcacatcatcatattttttatctctttggtttttcaaaa-caaattctaacatttatttcctacatnnnnnnn 253  Q
    |||||||||||||||||||| |||||||||||| |||||||||||  | ||||||||||||||||| ||||||||||||||| ||||||||||           
T  13777096 ctaagatttataccctttttataatactcacattatcatatttttcctttctttggtttttcaaaaacaaattctaacatttctttcctacatcacaaaa 13777195  T
Q  254 nnncaaataaagcataaacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttcta 353  Q
       ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13777196 a--caaataaagcataaacttttgtaaactgttaaatattaccaacgaaatatatattttagttgtttttctttccaaaagataagaatttgtacttcta 13777293  T
Q  354 attcacaacatcatcctagtacttaattagtatggacata-tggaaaaaagcccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaa 452  Q
    |||||||||||||||||||    || ||| ||||||| ||  || |||||| |||||||||| ||||||| |||||||||| ||||||||||||| ||||    
T  13777294 attcacaacatcatcctag----tatttattatggacgtacggggaaaaagtccttacctcgtaagctttccttcctagccaaactctaaaccacctcaa 13777389  T
Q  453 actcgatgcacatcattcctcgctccactaa 483  Q
    ||||||| |||||||||||||||||||||||    
T  13777390 actcgatacacatcattcctcgctccactaa 13777420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 6 - 159
Target Start/End: Original strand, 13773663 - 13773815
Alignment:
Q  6 ctccaagaatatatcgccacatatatgctaaaaataacactacaagcatttttctccggtaaataatatagtcacatatatactataataaaattaaaca 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |    
T  13773663 ctccaagaatatatagccacatatatgctaaaaataacactacaagcatttttctccaggaaataatatagtcacatatatactataataaaattaaa-a 13773761  T
Q  106 tttattaatttatccaggaagaatttcagaaaccatataatcattatttctaag 159  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  13773762 tttattaatttattcaggaagaatttcagcaaccatataatcattatttctaag 13773815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 24992538 - 24992418
Alignment:
Q  286 taaatattaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttaattagta 385  Q
    ||||| ||||||| |||| | |||||||| |||||||||||| ||||| |||||||||| ||||| ||||||| |||||   ||||||||||||    ||    
T  24992538 taaattttaccacgtaaagaaatattttaattgtttttcttttcaaaa-acaagaatttctacttataattcataacatatccctagtacttaa----ta 24992444  T
Q  386 tggacatatggaaaaaagcccttacc 411  Q
    | ||||||||| ||||||||||||||    
T  24992443 tagacatatgggaaaaagcccttacc 24992418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 34636328 - 34636218
Alignment:
Q  270 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcat 367  Q
    ||||||| ||||  ||||||| ||||||  | |||  ||||||||||||||||  ||||| ||| |||||||||| | ||| ||||||||| ||||| ||    
T  34636328 aacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataat 34636229  T
Q  368 cctagtactta 378  Q
    |||||||||||    
T  34636228 cctagtactta 34636218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 23260724 - 23260797
Alignment:
Q  307 atattttagttgttt--ttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtactta 378  Q
    |||||||||||||||  |||||| ||| |||||||||| | ||| ||||||||| ||||| |||||| ||||||    
T  23260724 atattttagttgttttgttcttttcaagagacaagaatctctacctctaattcataacataatcctaatactta 23260797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 32450409 - 32450482
Alignment:
Q  307 atattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtactta 378  Q
    ||||||||||||||||  ||||| ||| |||||||||| | ||| ||||||||| ||||  |||||||||||||    
T  32450409 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacacaatcctagtactta 32450482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 42861198 - 42861091
Alignment:
Q  49 aagcatttttctccggtaaataatatagtcacatatatactataataaaattaaacatttattaatttatccaggaagaatttcagaaaccatataatca 148  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42861198 aagcatttttctccgggaaataatatagtcacatatatactataatataattaaacatttattaatttatccaggaagaatttcagcaaccatataatca 42861099  T
Q  149 ttatttct 156  Q
    ||||||||    
T  42861098 ttatttct 42861091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 378
Target Start/End: Complemental strand, 536871 - 536761
Alignment:
Q  270 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcat 367  Q
    ||||||| ||||  ||||||| ||||||  | |||  ||||||||||||||||  ||||| ||| |||||||||| | ||| ||||||||| ||||| ||    
T  536871 aacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataat 536772  T
Q  368 cctagtactta 378  Q
    |||||||||||    
T  536771 cctagtactta 536761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 436
Target Start/End: Original strand, 4558081 - 4558246
Alignment:
Q  270 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt---tctttccaaaagacaagaatttgtacttctaattcacaacatca 366  Q
    ||||||| ||||  ||||||| ||||||  |||||  ||||||||||| ||||   ||||  ||| |||||||||| | ||| ||||| ||| |||||||    
T  4558081 aacttttataaaaggttaaattttaccatataaattcatattttagtttttttctctcttctcaacagacaagaatctctacctctaaatcataacatca 4558180  T
Q  367 tcctagtacttaattagtatggacatatggaaaaaagcccttacctcgaaagcttttcttcctagccgaa 436  Q
    ||||| ||||||    |||| ||| ||||| ||||||||||||||||| | | ||| | |||||||||||    
T  4558181 tcctaatactta----gtatagacgtatgggaaaaagcccttacctcgtacgttttacctcctagccgaa 4558246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 380 - 483
Target Start/End: Original strand, 7337300 - 7337404
Alignment:
Q  380 ttagtatggacatatgga-aaaaagcccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaaactcgatgcacatcattcctcgctcc 478  Q
    ||||||||||| |||||  ||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  7337300 ttagtatggacgtatggggaaaaagcccttacctcgtaagctttccttcctagccaaactctaaaccacctcaaactcgatacacatcattcctcgctcc 7337399  T
Q  479 actaa 483  Q
    |||||    
T  7337400 actaa 7337404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 360 - 456
Target Start/End: Original strand, 11968081 - 11968173
Alignment:
Q  360 aacatcatcctagtacttaattagtatggacatatggaaaaaagcccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaaactc 456  Q
    |||||||||||||||||||    |||||||| ||||| ||||| |||||||||||| | ||||||||||||||| ||||||||||||| ||||||||    
T  11968081 aacatcatcctagtactta----gtatggacgtatgggaaaaaacccttacctcgagaacttttcttcctagccaaactctaaaccacctcaaactc 11968173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 454
Target Start/End: Complemental strand, 16975395 - 16975211
Alignment:
Q  270 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcat 367  Q
    ||||||| ||||  ||||||| ||||||  | |||  ||||||||||||||||  ||||| ||| | |||||||| | ||| ||||||||| ||||| ||    
T  16975395 aacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacaaacaagaatctctacctctaattcataacataat 16975296  T
Q  368 cctagtacttaattagtatggacatatggaaaaaagcccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaaac 454  Q
    ||||||||||| | || ||| |  |  ||  |||||||||||||||| |||||||||||||||||| ||| |||||| || ||||||    
T  16975295 cctagtacttattaagaatgta--tggggggaaaagcccttacctcgtaagcttttcttcctagccaaacactaaactacctcaaac 16975211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 378
Target Start/End: Original strand, 5004829 - 5004939
Alignment:
Q  270 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcat 367  Q
    ||||||| ||||  ||||||| | ||||  |||||  ||||||||||||||||  ||||| |||||||||||||| | ||| ||||||||| ||||| ||    
T  5004829 aacttttataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaaaagacaagaatctctacctctaattcataacataat 5004928  T
Q  368 cctagtactta 378  Q
    |||||||||||    
T  5004929 cctagtactta 5004939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 378
Target Start/End: Original strand, 46404671 - 46404781
Alignment:
Q  270 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcat 367  Q
    ||||||| ||||  ||||||| ||||||  | |||  ||||||||||||||||  ||||| ||| |||||||||| | ||| ||||||||| ||||| ||    
T  46404671 aacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataat 46404770  T
Q  368 cctagtactta 378  Q
    |||||||||||    
T  46404771 cctagtactta 46404781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 307 - 446
Target Start/End: Complemental strand, 8944 - 8806
Alignment:
Q  307 atattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttaattagtatggacatatgga-aaaaag 403  Q
    ||||||||||||||||  ||||| ||| |||||||||||| ||| ||||||||| ||||| |||||||||||||    ||| | || |||||  ||||||    
T  8944 atattttagttgttttgttcttttcaacagacaagaatttatacctctaattcataacataatcctagtactta----gtaagaacgtatggggaaaaag 8849  T
Q  404 cccttacctcgaaagcttttcttcctagccgaactctaaacca 446  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  8848 cccttacctcgagagcttttcttcctagccaaactctaaacca 8806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 270 - 378
Target Start/End: Original strand, 28969292 - 28969400
Alignment:
Q  270 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcc 369  Q
    ||||||| |||| |||||||| ||||||  |||||  ||||||||||||||||||||  ||| |||||||||||| ||| ||||||||| ||||||||||    
T  28969292 aacttttataaaatgttaaattttaccatataaattaatattttagttgtttttcttctcaacagacaagaatttctacctctaattcataacatcatcc 28969391  T
Q  370 tagtactta 378  Q
    |||||||||    
T  28969392 tagtactta 28969400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 300 - 412
Target Start/End: Complemental strand, 41868678 - 41868570
Alignment:
Q  300 taaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttaattagtatggacatatggaaa 399  Q
    ||||||||||||| | |||||| ||||| ||| |||||||||||| |||||||||||||||||||||||||| |||    ||||||||||| ||||| ||    
T  41868678 taaatatatatttgaattgtttatcttttcaagagacaagaatttctacttctaattcacaacatcatcctaatac----ttagtatggacgtatgggaa 41868583  T
Q  400 aaagcccttacct 412  Q
    ||||| |||||||    
T  41868582 aaagcacttacct 41868570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 431
Target Start/End: Complemental strand, 40458939 - 40458887
Alignment:
Q  380 ttagtatggacatatgga-aaaaagcccttacctcgaaagcttttcttcctag 431  Q
    ||||||||||| |||||  |||||||||||||||||| |||||||||||||||    
T  40458939 ttagtatggacgtatggggaaaaagcccttacctcgagagcttttcttcctag 40458887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 69283 - 69235
Alignment:
Q  380 ttagtatggacatatggaaaaaagcccttacctcgaaagcttttcttcc 428  Q
    ||||||||||| ||||| ||||| ||||||||||| ||||||| |||||    
T  69283 ttagtatggacgtatgggaaaaaacccttacctcgtaagctttccttcc 69235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 453
Target Start/End: Complemental strand, 35839115 - 35839060
Alignment:
Q  398 aaaaagcccttacctcgaaagcttttcttcctagccgaactctaaaccacgtcaaa 453  Q
    ||||||| |||| ||||| ||||||||||||||| | ||||||||||||| |||||    
T  35839115 aaaaagctcttagctcgagagcttttcttcctagtcaaactctaaaccacctcaaa 35839060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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