View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_high_11 (Length: 437)
Name: NF0961_high_11
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 34143427 - 34143043
Alignment:
| Q |
1 |
gatacagagcacaccaagaatgtaagagactggaaagaagtgtttgattttctctctaatgaccctactttggttcctctgaattctgatgaacacgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34143427 |
gatacagagcacaccaagaatgtaagagactggaaagaagtgtttgattttctctctaatgaccctactttggttcctctgaattctgatgaacacgatg |
34143328 |
T |
|
| Q |
101 |
atcaagtcactcactggactaatccatcccctcaataccctccacacttcaagtaattcatctttgtaccatactaatcatgttaaatatgtttgtattc |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34143327 |
atcaagtcacttactggactaatccatcccctcaataccctccacacttcaagtaattcatctttgtaccatactaatcatgttaaatatgtttgtattc |
34143228 |
T |
|
| Q |
201 |
catgcaaaattatgcagttttgagtttagtagctt-aaaaaatgtatccatttttagttaactcgccatttttagtcctttcaaaaggacaaaaacatat |
299 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34143227 |
catgcaaaattatgcag--ttgagtttagtagcttaaaaaaatgtatccatttttagtcaactcaccatttttagtcctttcaaaaggacaaaaacatat |
34143130 |
T |
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| Q |
300 |
tattctttgatatcaaactctaaataatttcagttattatactagcacacagttaatgatattgtagctcgcacctgcaccaacact |
386 |
Q |
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| T |
34143129 |
tattctttgatatcaaactctaaataatttcagttattatactagcacacagttaatgatattgtagctcgcacctgcaccaacact |
34143043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 34137281 - 34137131
Alignment:
| Q |
1 |
gatacagagcacaccaagaatgtaagagactggaaagaagtgtttgattttctctctaatgaccctactttggttcctctgaattctgatgaacacgatg |
100 |
Q |
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|||||||| |||||||| ||||| || ||||||||||||||| ||||||||||| | || || || ||||||||||||||||||||||||||| |||||| |
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| T |
34137281 |
gatacagaacacaccaaaaatgttagggactggaaagaagtgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatg |
34137182 |
T |
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| Q |
101 |
atcaagtcactcactggactaatccatcccctcaataccctccacacttca |
151 |
Q |
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||||| | | ||| ||| ||||||||||||| |||| |||| ||||||||| |
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| T |
34137181 |
atcaatttattcaatggtctaatccatccccacaattcccttcacacttca |
34137131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 34133370 - 34133220
Alignment:
| Q |
1 |
gatacagagcacaccaagaatgtaagagactggaaagaagtgtttgattttctctctaatgaccctactttggttcctctgaattctgatgaacacgatg |
100 |
Q |
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||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||| | || ||||| || ||||||| || |||||||||||| |||| |
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| T |
34133370 |
gatacagagcataccaaaaatgttagagactggaaagaagtgtttgattttctttctcaagatcctacattagttcctcggagttctgatgaacatgatg |
34133271 |
T |
|
| Q |
101 |
atcaagtcactcactggactaatccatcccctcaataccctccacacttca |
151 |
Q |
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|| || | ||| |||||||||| ||| |||||||| |||||||| |||| |
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| T |
34133270 |
atggtgttattcaatggactaatcaatcacctcaatatcctccacaattca |
34133220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 34127097 - 34126966
Alignment:
| Q |
1 |
gatacagagcacaccaagaatgtaagagactggaaagaagtgtttgattttctctctaatgaccctactttggttcctctgaattctgatgaacacgatg |
100 |
Q |
| |
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|||| |||||||||||||||||||||| |||||| |||||||||||||||| || | | || || ||||||||||||||||||| ||||||| | |||| |
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| T |
34127097 |
gataaagagcacaccaagaatgtaagaaactggatagaagtgtttgattttttcgccagagatcccactttggttcctctgaattgtgatgaaaatgatg |
34126998 |
T |
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| Q |
101 |
atcaagtcactcactggactaatccatcccct |
132 |
Q |
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||||||| | ||| ||| ||||||| |||||| |
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| T |
34126997 |
atcaagttattcaatggtctaatccgtcccct |
34126966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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