View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_high_19 (Length: 365)
Name: NF0961_high_19
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 2 - 336
Target Start/End: Original strand, 33827951 - 33828285
Alignment:
| Q |
2 |
gtgtagtatcataggccatacaatcaatacagtaagaaactctttctgggaaaacggtttcgatatcatatgcgacagatgaacagcttccactgtaatg |
101 |
Q |
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| T |
33827951 |
gtgtagtattataggccatacaatcaatacagtaagaaactctttctgggaaaacggtttcgatatcatatgcgacagatgaacagcttccactgtaatg |
33828050 |
T |
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| Q |
102 |
atgataatgcgtgattttggaattggaagtgagattttaatgctgcaatgataaattttacacggtgcaagaagtcagtaatgatgtagttttgaaatca |
201 |
Q |
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| T |
33828051 |
atgataatgcgtgattttggaattggaagtgagattttaatgctgcaatgataaattttacacggtgcaagaagtcagtaatgatgtagttttgaaatca |
33828150 |
T |
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| Q |
202 |
tccggtaatggctgaaaagttattaaaacaattatagttaatatgagaggaattatttgattaagttggtgatataacttaaacaggtttatggttaaaa |
301 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828151 |
tccggtaatggctgaaaaattattaaaacaattatagttaatatgagaggaattatttgattaagttggtgatataacttaaacaggtttatggttaaaa |
33828250 |
T |
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| Q |
302 |
agaaattaaaaacttatgtatatcttaatgaaaaa |
336 |
Q |
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||||||||||||||||||||| |||||| |||||| |
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| T |
33828251 |
agaaattaaaaacttatgtatgtcttaacgaaaaa |
33828285 |
T |
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