View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_high_20 (Length: 341)
Name: NF0961_high_20
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 30 - 329
Target Start/End: Complemental strand, 43569197 - 43568898
Alignment:
| Q |
30 |
cttccatcacaagattcccatctctacccttatcctcagcctcgacacaactccctccaacattcaccattatcctcccaccttttctcaaagacttgcg |
129 |
Q |
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| T |
43569197 |
cttccatcacaagattcccatctctacccttatcctcagcctccacacaactccctccaacattcaccattatcctcccaccttttctcaaagacttgcg |
43569098 |
T |
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| Q |
130 |
tagtttctcccacgtcgcagtctcttgaagctccggtatcaaactcccattcgaaaacaaatccacaataatgcctgaaaacccacctaacaaactcgct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
43569097 |
tagtttctcccacgtcgcagtctcttgaagctccggtatcaaactccccttcgaaaacaaatcaacaataatgcctgaaaacccacctaccaaactcgct |
43568998 |
T |
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| Q |
230 |
gttaaagcatttccaacataaacaaaaagtctatttttattctctctttcaatcttgtcaagattgaaaaactctcgggcaacatcaattacagaagtat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43568997 |
gttaaagcatttccaacataaacaaaaagtctatttttattctctctttcaatcttgtcaagattgaaaaactctcgggcaacatcaattacagaagtat |
43568898 |
T |
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