View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_high_21 (Length: 332)
Name: NF0961_high_21
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 62 - 313
Target Start/End: Original strand, 2333328 - 2333577
Alignment:
| Q |
62 |
gcaacgtggacgccgctattttcaacaacaattccatggtagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagatta |
161 |
Q |
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| T |
2333328 |
gcaatgtggatgccgctgttttcaacaacaattccatggtagggtatggtatgtgctttcgagattcattggggcagcttttacttgaaaaatcagatta |
2333427 |
T |
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| Q |
162 |
catgcaattttctgctactgttcttgaagtggaaaccattgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttg |
261 |
Q |
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| T |
2333428 |
catgcaaaattctgctactattcttaaggtggaaaccattgggctgctagaagctatggagatggcaat--ctccaatggcatgcataatgttatatttg |
2333525 |
T |
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| Q |
262 |
aaactgacagtagatccttggtgaatacactctactctactactactcccct |
313 |
Q |
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||||||||||||||||| ||| |||| |||||||||||||||| |||||||| |
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| T |
2333526 |
aaactgacagtagatccatggagaatgcactctactctactaccactcccct |
2333577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 309
Target Start/End: Complemental strand, 34297831 - 34297602
Alignment:
| Q |
77 |
ctattttcaacaacaattccatggtagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagattacatgcaattttctgc |
176 |
Q |
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||||||||||||||| ||| || |||| ||||| ||||||||| |||||||| | | || ||||||||| ||||| | ||||| ||||| |||| || |
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| T |
34297831 |
ctattttcaacaaca-ttctatcttaggatatggtatgtgctttagagattcactaagacagtttttacttggaaaatcatattacttgcaaatttccgc |
34297733 |
T |
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| Q |
177 |
tactgttcttgaagtggaaaccattgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagat |
276 |
Q |
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| T |
34297732 |
tactgttcttgaagtggaaaccattggatggctagaagaaatgaagatggcagt--tttcaatggtatgcatgatgttatctttgaaactgacagtagat |
34297635 |
T |
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| Q |
277 |
ccttggtgaatacactctactctactactactc |
309 |
Q |
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| || |||||| |||||||| |||||||||||| |
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| T |
34297634 |
ctttagtgaatgcactctacactactactactc |
34297602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 17401108 - 17401009
Alignment:
| Q |
62 |
gcaacgtggacgccgctattttcaacaacaattccatggtagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagatta |
161 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||| ||||| |||||| |
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| T |
17401108 |
gcaacgtggatgccgctatttccaacaacaattccatggtagggtatggtatgtgcttccgagattcattcgggcagcttttacttgtaaaatcagatta |
17401009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 62 - 313
Target Start/End: Complemental strand, 14436245 - 14435994
Alignment:
| Q |
62 |
gcaacgtggacgccgctattttcaacaacaattccatggtagggtat--ggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagat |
159 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||| |||| || |||||||||||||||||||| ||| | ||||||||| ||||| | || |
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| T |
14436245 |
gcaacgtggatgcctctattttcaacaacaattccatggtagtgtatatggtatgtgctttcgagattcattggggcaaattttacttggaaaatcatat |
14436146 |
T |
|
| Q |
160 |
tacatgcaattttctgctactgttcttgaagtggaaaccattgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatt |
259 |
Q |
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||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||| |||||||||||||||| |
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| T |
14436145 |
tacttgcaaatttctgctactgttcttgaagtggaaaccattgggttgctagaagctatgaagatgacaat--ctccaatggtgtgcataatgttatatt |
14436048 |
T |
|
| Q |
260 |
tgaaactgacagtagatccttggtgaatacactctactctactactactcccct |
313 |
Q |
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|||||||||| ||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
14436047 |
tgaaactgacggtagatccttggtgaatgcactttactctactactactcccct |
14435994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 118 - 264
Target Start/End: Original strand, 30927946 - 30928088
Alignment:
| Q |
118 |
tttcgagattcatttgggtagcttttacttgaaaaattagattacatgcaattttctgctactgttcttgaagtggaaaccattgggcagctagaagcta |
217 |
Q |
| |
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|||||||||||||| ||| |||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| |
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| T |
30927946 |
tttcgagattcattagggcagcttttacttggaaaatcatattacatgcaattttctgctac--ttcttgaagtggaaactattgggctgctagaagcta |
30928043 |
T |
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| Q |
218 |
tgaagatggcaataactccaatggcatgcataatgttatatttgaaa |
264 |
Q |
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||||||||||||| |||||||||||||||||||||| | ||||||| |
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| T |
30928044 |
tgaagatggcaat--ctccaatggcatgcataatgttttttttgaaa |
30928088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 30928091 - 30928166
Alignment:
| Q |
238 |
atggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactctactactactcccct |
313 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30928091 |
atggcatgcataatgttatatttgaaactgaaagtagatccttggtgaatacactctagtctactactactcccct |
30928166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 311
Target Start/End: Original strand, 55640875 - 55641104
Alignment:
| Q |
80 |
ttttcaacaacaattccatggtagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagattacatgcaattttctgctac |
179 |
Q |
| |
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||||||| |||||||| | |||||||||| ||||||||| |||||||| | ||| | |||||||||| |||| ||||||| ||| | |||| |||| |
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| T |
55640875 |
ttttcaataacaattcaaccttagggtatggtatgtgctttagagattcactggggcaacttttacttggtaaatcagattacttgcgaatttccgctat |
55640974 |
T |
|
| Q |
180 |
tgttcttgaagtggaaaccattgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagatcct |
279 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||||||||||||||| | |||||| |||||| | |||||||||||||| |||| |||||| | |
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| T |
55640975 |
tgttcttgaagtgggaaccattggattgctagaagctatgaagatggcaat--tttcaatggtatgcatgaagttatatttgaaacggacaatagatctt |
55641072 |
T |
|
| Q |
280 |
tggtgaatacactctactctactactactccc |
311 |
Q |
| |
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| | ||| |||| ||| |||||| ||||||| |
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| T |
55641073 |
tagaaaatgcactatacactactaatactccc |
55641104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 101 - 311
Target Start/End: Original strand, 42661259 - 42661466
Alignment:
| Q |
101 |
tagggtatggcatgtgctttcgagattcatttgggtagcttttacttgaaaaattagattacatgc-aattttctgctactgttcttgaagtggaaacca |
199 |
Q |
| |
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|||||||||| ||||||||| |||||||||| ||| | ||||||||| |||| | ||||| ||| ||||||| |||| |||||||||||||||||||| |
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| T |
42661259 |
tagggtatggtatgtgctttagagattcattggggcaatttttacttggtaaatcaaattacttgcgaattttc-gctattgttcttgaagtggaaacca |
42661357 |
T |
|
| Q |
200 |
ttgggcagctagaagctatgaagatggcaataactccaatggcatgcataatgttatatttgaaactgacagtagatccttggtgaatacactctactct |
299 |
Q |
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|||| |||||||||||| ||||||||||| | |||||| |||||| | |||||||||| ||| |||| |||||| || || ||| |||| ||| || |
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| T |
42661358 |
ttggattgctagaagctataaagatggcaat--tttcaatggtatgcatgaagttatatttg-aacggacactagatctttagtaaatgcactatacact |
42661454 |
T |
|
| Q |
300 |
actactactccc |
311 |
Q |
| |
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|||||||||||| |
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| T |
42661455 |
actactactccc |
42661466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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