View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0961_high_23 (Length: 324)
Name: NF0961_high_23
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 6e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 29 - 237
Target Start/End: Complemental strand, 7344044 - 7343837
Alignment:
| Q |
29 |
aacaaagatattggaactatggagaatttggccctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttcatt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7344044 |
aacaaagatattggaactatggagaatttggccctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttcatt |
7343945 |
T |
|
| Q |
129 |
gtccaaaagaggatgctgatgatacttcccatagnnnnnnnttataattttattaataagaataaagtatcaaatcatcaaataacttgaatgattttgg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7343944 |
gtccaaaagaggatgctgatgatacttcccatag-aaaaaattataattttattaataagaataaagtatcaaatcatcaaataacttgaatgattttgg |
7343846 |
T |
|
| Q |
229 |
tttaacctt |
237 |
Q |
| |
|
||||||||| |
|
|
| T |
7343845 |
tttaacctt |
7343837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 29 - 237
Target Start/End: Original strand, 11664452 - 11664663
Alignment:
| Q |
29 |
aacaaagatattggaactatggagaatttggccctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttcatt |
128 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11664452 |
aacaaaaatattggaattgtggagaatttggccctccctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataattttatt |
11664551 |
T |
|
| Q |
129 |
gtccaaaagaggatgctgatgatacttcccata-gnnnnnnnttataattttattaataagaataaag---tatcaaatcatcaaataacttgaatgatt |
224 |
Q |
| |
|
|||| |||||| | || ||||||||| | ||| | ||||||||||||| |||||||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
11664552 |
gtcctaaagagcacgcaaatgatactt-caatatgaaaaaatttataattttattgataagaataaagtaatatcaaatcatcaaataaatggaatgatt |
11664650 |
T |
|
| Q |
225 |
ttggtttaacctt |
237 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11664651 |
ttggtttaacctt |
11664663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 11669796 - 11669860
Alignment:
| Q |
62 |
ctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttca |
126 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
11669796 |
ctccctagcatgagttgcacaagtggtgttgatggagaaggagttgtttgcaggagataatttca |
11669860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 11656014 - 11656090
Alignment:
| Q |
48 |
tggagaatttggccctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaagataattt |
124 |
Q |
| |
|
||||||||||| ||||||||| ||| || ||||||||||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
11656014 |
tggagaatttgagtctccctagcatgagttgtacaagtggaattgatgggcaaggagttgtatgcaggagataattt |
11656090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University