View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_high_6 (Length: 484)
Name: NF0961_high_6
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 28 - 455
Target Start/End: Original strand, 29656439 - 29656861
Alignment:
| Q |
28 |
cagatcaacctaaatggatacaccatcttcattaatgggttattttcattggctatatatgtctagtctagagcattctttgacgtaat----atgctct |
123 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29656439 |
cagatcaacctaaatggatacaccatcttcgttaatcggttattttcattggctatatatgtctagtctagagcattctttgacgtaatttatatgctct |
29656538 |
T |
|
| Q |
124 |
aatttccattttacttctctcttataagcagcttctagcagaatagtatttcaatgaccctcattctatcatttccctttctctacatacttg-tagttt |
222 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
29656539 |
aatttccattttacttttctcttataagcagcttctagcagaatagtatttcaatgac-----ttctatcatttccctttctctacatacttggtagttt |
29656633 |
T |
|
| Q |
223 |
ctagtgtagnnnnnnnnnnnngaaaaagtttatagtgtaaatttcttggtacaaactagacatccgtgttttctcaacggtaaatttattatggtgaggc |
322 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29656634 |
ctagtgtagtttttttttttt--aaaagtttctagtgtaaatttcttggtacaaactagacatccgtgttttctcaaccgtaaatttattatggtgaggc |
29656731 |
T |
|
| Q |
323 |
taaagtatcaatacgcttggtaaagggtagaaattaatgaacagttagatatctcagctaactaaccgtgaatggcaatgccatttatattgtcgaacta |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29656732 |
taaagtatcaatacgcttggtaaagggtagaaattaatgaacagttagatatctcagctaactaaccgtgaatggcaatgccatttatattgtcgaact- |
29656830 |
T |
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| Q |
423 |
gcagcaactagtaagtcacattcatattgaatg |
455 |
Q |
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||||||||| ||||||||||||||||||||| |
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| T |
29656831 |
--agcaactaggaagtcacattcatattgaatg |
29656861 |
T |
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