View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0961_high_8 (Length: 470)

Name: NF0961_high_8
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0961_high_8
NF0961_high_8
[»] chr2 (1 HSPs)
chr2 (105-436)||(10770053-10770384)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 105 - 436
Target Start/End: Complemental strand, 10770384 - 10770053
Alignment:
105 tggatagtggaacttatctttttgctatgtattataaacaatggcttaaagttagtggtgctagtgagcttcctcttccaattgttcccttgccatcaag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10770384 tggatagtggaacttatctttttgctatgtattataaacaatggcttaaagttagtggtgctagtgagcttcctcttccaattgttcccttgccatcaag 10770285  T
205 accaagttttaggtcatcaagaagaatgtcttcagattcttcaatttcaaattcttccattaatccaaatttgtaagtgaacaaccannnnnnnatgata 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||||    
10770284 accaagttttaggtcatcaagaagaatgtcttcagattcttcaatttcaaatacttccattaatccaaatttgtaagtgaacaaccatttttttatgata 10770185  T
305 taaaaatatgtgtatatagtactccctctggaacgaaatataagcaaaataatatatttaccggacaagataaatgtacnnnnnnnccttaaatttcatt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||       ||||||||||||||    
10770184 taaaaatatgtgtatatagtactccctctggaacgaaatataagcaaaagaatatatttaccggacaagatacatgtactttttttccttaaatttcatt 10770085  T
405 attgagtgagcagttatattatgtgctttaaa 436  Q
    |||||||||| |||||||||||||||||||||    
10770084 attgagtgagtagttatattatgtgctttaaa 10770053  T

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