View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_low_1 (Length: 761)
Name: NF0961_low_1
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 414 - 732
Target Start/End: Complemental strand, 49373116 - 49372798
Alignment:
| Q |
414 |
cgcttctgggcatcttgaaaagnnnnnnntacgaacccgaacacgttctgagtgaggcaaataacggagaagaatgttagacatgtagtgagctttaagg |
513 |
Q |
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| T |
49373116 |
cgcttctgggcatcttgaaaagaaaaaaatacgaacccgaacacgttctgagtgaggcaaataacggagaagaatgttagacatgtagtgagctttaagg |
49373017 |
T |
|
| Q |
514 |
tctctggagaggttaaggatgtgagaaggaagatgtctttcaagtgaagtgaagacaagtgggttgaaatccaaaggaagatcttcatagttgtcaggca |
613 |
Q |
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| T |
49373016 |
tctctggagaggttaaggatgtgagaaggaagatgtctttcaagtgaagtgaagacaagtgggttgaaatccaaaggaagatcttcatagttgtcaggca |
49372917 |
T |
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| Q |
614 |
tgtggtctcctctagggcttccgagaagtcttgttgttggattcaaattggaagcaccaacaacaccgttaccgttggtggtagcagcagcaatgtctcc |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49372916 |
tgtggtctcctctagggcttccgagaagtcttgttgttggattcaaattggaagcaccaacaacaccgttaccgttggtggtagcagcagcaatgtctcc |
49372817 |
T |
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| Q |
714 |
gtttgatgcttgagctctg |
732 |
Q |
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| T |
49372816 |
gtttgatgcttgagctctg |
49372798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 49373505 - 49373183
Alignment:
| Q |
13 |
aatatcacaagtactgatagcaatagataagctcaaaataagtaaattcaaacaagccctacagataagctcaaataagtcaaccctaaacaaaccctaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49373505 |
aatatcacaagtactgatagcaatagataagctcaaaataagtaaattcaaacaagccctacagataagctcaaataagtcaaccctaaacaaaccctaa |
49373406 |
T |
|
| Q |
113 |
agataagattgacatccacctatgtcttaacgatatcacagtctgtaataaaattcatcttcccccaatgcctaaacaaaacnnnnnnnntcaatatctt |
212 |
Q |
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| T |
49373405 |
agataagattgacatcaacctatgtcttaacgatatcacagtctgtagtaaaatttatcttcccccaatgcctaaaca------------tcaatatctt |
49373318 |
T |
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| Q |
213 |
gccctaaattatctcagaacccctcaaaatcaagcaactagcagatacaatataacccacaaaccctattgattatggaccacatcaaaatcaaattttt |
312 |
Q |
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| T |
49373317 |
gccctaaattatctcagaaaccctcaaaatcaagcaactagcagttacgatataacccacaaaccctattgattatggaccacatcaaaatcaaattttt |
49373218 |
T |
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| Q |
313 |
attcaagaaatatg-aaaatataaggtcttcatac |
346 |
Q |
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|||||||||||||| |||||||||||| ||||||| |
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| T |
49373217 |
attcaagaaatatgaaaaatataaggttttcatac |
49373183 |
T |
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