View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_low_10 (Length: 459)
Name: NF0961_low_10
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 28 - 325
Target Start/End: Complemental strand, 29038239 - 29037917
Alignment:
| Q |
28 |
cagttatgctactagctatgtcatatgttgtttgttaaaaaattactagtatatgggaatgtacttggaattttatgcaattagacacta---tcatatc |
124 |
Q |
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| T |
29038239 |
cagttatgctactagctatgtcatatgttgtttgttaaacaattactagtatatgtgaatgtatttggaattttatgcaattagacactaatatcatatc |
29038140 |
T |
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| Q |
125 |
ttgttt---------gtgtttacttctgtgtgatcataaagcaatttttcttcttggtcaaaacctatatatacattaagtttggtctgattagtgtcta |
215 |
Q |
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| T |
29038139 |
ttgttttgattgtttgtgtttacttctgtgtgatcataaagcaatttttcttcttggtcaaaacctatatagacattaagtttggtctgattagtgtcta |
29038040 |
T |
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| Q |
216 |
tatcaggttatgtaaatgcattcctag-------------ttgaatagcactaatacaggattcttttgaacaatatatttggttcattgacaggaatct |
302 |
Q |
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| T |
29038039 |
tatcaggttatgtaaatgcattcctaggaactatattatcttgaataacactaatacaggattcttttgaacaatatatttggttcattgacaggaatct |
29037940 |
T |
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| Q |
303 |
tctataaaactacatatatatga |
325 |
Q |
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| T |
29037939 |
tttataaaactacatatatatga |
29037917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 342 - 446
Target Start/End: Complemental strand, 33828067 - 33827963
Alignment:
| Q |
342 |
aaatcacgcattatcatcattacagtggaagctgttcatctgtcgcatatgatatcgaaaccgttttcccagaaagagtttcttactgtattgattgtat |
441 |
Q |
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| T |
33828067 |
aaatcacgcattatcatcattacagtggaagctgttcatctgtcgcatatgatatcgaaaccgttttcccagaaagagtttcttactgtattgattgtat |
33827968 |
T |
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| Q |
442 |
ggcct |
446 |
Q |
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| T |
33827967 |
ggcct |
33827963 |
T |
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