View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0961_low_11 (Length: 456)

Name: NF0961_low_11
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0961_low_11
NF0961_low_11
[»] chr1 (20 HSPs)
chr1 (28-448)||(40686543-40686968)
chr1 (130-223)||(17831546-17831639)
chr1 (171-223)||(3921659-3921711)
chr1 (130-182)||(22881672-22881724)
chr1 (165-223)||(14332395-14332452)
chr1 (189-223)||(18946049-18946083)
chr1 (161-223)||(50233383-50233445)
chr1 (159-228)||(24462280-24462349)
chr1 (165-230)||(28170368-28170432)
chr1 (130-230)||(38078669-38078770)
chr1 (171-223)||(40176595-40176647)
chr1 (172-234)||(7988455-7988517)
chr1 (165-230)||(24176805-24176871)
chr1 (193-222)||(11571599-11571628)
chr1 (253-294)||(32547555-32547596)
chr1 (189-234)||(43966816-43966861)
chr1 (130-214)||(10475001-10475085)
chr1 (171-215)||(24806937-24806981)
chr1 (170-222)||(40317832-40317884)
chr1 (193-221)||(40747790-40747818)
[»] chr4 (23 HSPs)
chr4 (158-304)||(37496683-37496831)
chr4 (186-234)||(13307884-13307932)
chr4 (186-234)||(44362673-44362721)
chr4 (178-238)||(49887755-49887815)
chr4 (186-220)||(28663499-28663533)
chr4 (170-223)||(43476790-43476844)
chr4 (186-230)||(13117436-13117480)
chr4 (168-223)||(22799908-22799964)
chr4 (164-223)||(43093540-43093599)
chr4 (193-223)||(5654606-5654636)
chr4 (188-230)||(10164862-10164904)
chr4 (193-223)||(10546162-10546192)
chr4 (185-230)||(13484029-13484075)
chr4 (193-223)||(18513256-18513286)
chr4 (166-232)||(20743284-20743350)
chr4 (193-223)||(34589721-34589751)
chr4 (193-269)||(903936-904013)
chr4 (186-223)||(10634997-10635034)
chr4 (193-280)||(30982834-30982923)
chr4 (269-306)||(39619043-39619080)
chr4 (146-223)||(56049844-56049920)
chr4 (193-221)||(26276026-26276054)
chr4 (186-234)||(35062452-35062499)
[»] chr6 (25 HSPs)
chr6 (129-232)||(10031520-10031623)
chr6 (165-230)||(6751890-6751954)
chr6 (186-239)||(19369824-19369877)
chr6 (154-219)||(10421710-10421774)
chr6 (174-230)||(5579649-5579705)
chr6 (166-221)||(15443682-15443737)
chr6 (186-221)||(29959182-29959217)
chr6 (130-220)||(17168845-17168935)
chr6 (166-239)||(22745945-22746017)
chr6 (166-223)||(34868172-34868229)
chr6 (129-221)||(7377929-7378021)
chr6 (130-221)||(5970125-5970216)
chr6 (186-224)||(5635902-5635940)
chr6 (153-223)||(8623179-8623249)
chr6 (193-223)||(9024191-9024221)
chr6 (193-223)||(10157998-10158028)
chr6 (165-223)||(13211296-13211354)
chr6 (128-221)||(16388250-16388343)
chr6 (172-234)||(29670886-29670948)
chr6 (186-223)||(1334668-1334705)
chr6 (166-223)||(4859128-4859185)
chr6 (130-223)||(16516892-16516985)
chr6 (186-223)||(31430287-31430324)
chr6 (186-234)||(16503682-16503730)
chr6 (272-304)||(19369889-19369921)
[»] scaffold0024 (1 HSPs)
scaffold0024 (160-234)||(18112-18186)
[»] chr2 (18 HSPs)
chr2 (164-230)||(43586013-43586079)
chr2 (243-304)||(14450710-14450772)
chr2 (189-234)||(24067263-24067308)
chr2 (165-234)||(42665594-42665663)
chr2 (166-234)||(11439782-11439850)
chr2 (186-230)||(13501086-13501130)
chr2 (188-230)||(14450803-14450845)
chr2 (193-223)||(18570986-18571016)
chr2 (172-230)||(44984658-44984716)
chr2 (193-230)||(10535767-10535804)
chr2 (186-223)||(18512157-18512194)
chr2 (186-223)||(26787813-26787850)
chr2 (185-230)||(37211893-37211938)
chr2 (193-229)||(6180874-6180910)
chr2 (148-232)||(12748653-12748737)
chr2 (174-238)||(19613613-19613677)
chr2 (186-230)||(37491863-37491907)
chr2 (193-221)||(40681996-40682024)
[»] chr7 (23 HSPs)
chr7 (131-239)||(1885519-1885633)
chr7 (164-230)||(5937429-5937495)
chr7 (185-223)||(2144554-2144592)
chr7 (166-293)||(22801684-22801813)
chr7 (198-298)||(25956464-25956554)
chr7 (129-230)||(44317294-44317395)
chr7 (186-239)||(48964061-48964114)
chr7 (134-221)||(42720907-42720994)
chr7 (189-223)||(2143868-2143902)
chr7 (170-223)||(9050148-9050201)
chr7 (180-224)||(6091328-6091372)
chr7 (179-215)||(31377000-31377036)
chr7 (193-223)||(38134421-38134451)
chr7 (193-223)||(44172905-44172935)
chr7 (193-238)||(10893347-10893392)
chr7 (160-225)||(29910689-29910754)
chr7 (165-222)||(30516373-30516430)
chr7 (166-239)||(31808508-31808580)
chr7 (186-223)||(35238199-35238236)
chr7 (185-234)||(36196786-36196835)
chr7 (193-234)||(36314631-36314672)
chr7 (186-230)||(10702552-10702595)
chr7 (191-223)||(18678160-18678192)
[»] chr8 (24 HSPs)
chr8 (160-230)||(24295145-24295215)
chr8 (164-230)||(26915248-26915314)
chr8 (153-230)||(31119066-31119138)
chr8 (186-234)||(27733854-27733902)
chr8 (166-230)||(42874509-42874573)
chr8 (131-221)||(4786355-4786445)
chr8 (186-243)||(24208701-24208757)
chr8 (186-222)||(6960692-6960728)
chr8 (165-229)||(22600515-22600579)
chr8 (186-230)||(34073986-34074030)
chr8 (186-221)||(1639497-1639532)
chr8 (164-239)||(10497815-10497890)
chr8 (193-223)||(29198494-29198524)
chr8 (165-219)||(34739080-34739134)
chr8 (191-220)||(1591311-1591340)
chr8 (193-234)||(3508066-3508107)
chr8 (171-232)||(9936806-9936867)
chr8 (172-221)||(11246096-11246145)
chr8 (167-220)||(14227210-14227263)
chr8 (193-221)||(10441217-10441245)
chr8 (165-221)||(14943114-14943170)
chr8 (193-221)||(34201063-34201091)
chr8 (271-303)||(35014847-35014879)
chr8 (272-304)||(41686761-41686793)
[»] chr5 (20 HSPs)
chr5 (165-223)||(26205775-26205833)
chr5 (186-228)||(30080511-30080553)
chr5 (188-234)||(16207595-16207641)
chr5 (165-239)||(32444752-32444826)
chr5 (186-223)||(42192283-42192320)
chr5 (171-211)||(309150-309190)
chr5 (186-230)||(21319953-21319997)
chr5 (171-239)||(28296320-28296388)
chr5 (172-223)||(11596470-11596521)
chr5 (164-230)||(19167584-19167651)
chr5 (186-241)||(38784813-38784868)
chr5 (158-223)||(14840126-14840189)
chr5 (193-223)||(43208289-43208319)
chr5 (166-223)||(2039864-2039921)
chr5 (271-304)||(9031881-9031914)
chr5 (186-223)||(10010561-10010598)
chr5 (193-230)||(31264452-31264489)
chr5 (193-230)||(41558662-41558699)
chr5 (195-223)||(10009842-10009870)
chr5 (166-234)||(38749567-38749635)
[»] scaffold0314 (1 HSPs)
scaffold0314 (180-230)||(8949-8999)
[»] chr3 (12 HSPs)
chr3 (173-239)||(49179714-49179780)
chr3 (130-209)||(3180793-3180872)
chr3 (186-223)||(14338498-14338535)
chr3 (186-239)||(15864252-15864305)
chr3 (160-221)||(41319327-41319388)
chr3 (130-182)||(39756187-39756239)
chr3 (165-221)||(48202286-48202342)
chr3 (269-304)||(34834871-34834906)
chr3 (186-223)||(52558143-52558180)
chr3 (193-225)||(21149081-21149113)
chr3 (171-223)||(34409357-34409409)
chr3 (193-221)||(40017386-40017414)
[»] scaffold0011 (1 HSPs)
scaffold0011 (146-223)||(240036-240113)
[»] scaffold0504 (2 HSPs)
scaffold0504 (186-230)||(8705-8749)
scaffold0504 (259-304)||(8645-8691)
[»] scaffold0007 (1 HSPs)
scaffold0007 (165-230)||(225276-225341)


Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 28 - 448
Target Start/End: Complemental strand, 40686968 - 40686543
Alignment:
Q  28 cacattttacattcgttccatggacttcttgtgctaccttcccactctctttttctcctcttaattttatgtcccaagtgtagtaaatagtaaattaaaa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40686968 cacattttacattcgttccatggacttcttgtgctaccttcccactctctttttctcctcttaattttatgtcccaagtgtagtaaatagtaaattaaaa 40686869  T
Q  128 tttatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaag 227  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |||    
T  40686868 tttatgaagcacaaatatagacaccgacatcggacatgacactgacacgtcgacatcgataaaattttgataaaatgatataattcaatgtaatcataag 40686769  T
Q  228 tgttgg-----tatcgtatcgtgttagacacgacatgtgtcagacacgggacacgccttcaatcagaagtgtccgtacaacataaattaaattaacaaca 322  Q
    ||| ||     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40686768 tgtcggtatcatatcgtatcgtgttagacacgacatgtgtcagacacggaacacgccttcaatcagaagtgtccgtacaacatagattaaattaacaaca 40686669  T
Q  323 acaaatggtaaatcaccatattcaggctccatttccccattttgatactttacattattagttaatcacatcattgataatatttattacttagatttct 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40686668 acaaatggtaaatcaccatattcaggctccatttccccattttgatactttacattattagttaatcacatcattgaaaatatttattacttagatttct 40686569  T
Q  423 gaattcttatggaatttatctctgct 448  Q
    ||||||||||||||||||||||||||    
T  40686568 gaattcttatggaatttatctctgct 40686543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 17831639 - 17831546
Alignment:
Q  130 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    ||||||||||||||| |||||| |||| |||| | |||||||||||| ||||| |  ||| | ||||||||||| |||| ||||| ||||||||    
T  17831639 tatgaagcacggatacagacacagacaccggatacgacactgacacgccgacaccgctaataatttgagaaaatcacattattcagtgtaatca 17831546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 3921659 - 3921711
Alignment:
Q  171 gacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||| ||||| |||| | |||||||||||||||||||||||||||||||    
T  3921659 gacacgtcaacatcaataataatttgagaaaatgacataattcaatgtaatca 3921711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 22881724 - 22881672
Alignment:
Q  130 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgaca 182  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  22881724 tatgaagcacggatatagacacggacaccggacacgacactgacacgccgaca 22881672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 14332395 - 14332452
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||| ||| ||||||| | ||||||||| ||||||||||||||||||||||||||||    
T  14332395 gacactaacaagtcgacaccgataaaattt-gagaaaatgacataattcaatgtaatca 14332452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 18946083 - 18946049
Alignment:
Q  189 aaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||||||    
T  18946083 aaattttgagaaaatgacataattcaatgtaatca 18946049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 50233383 - 50233445
Alignment:
Q  161 acatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||| |||| ||| ||| |||||| || ||||||| |||||||||||||||||||||||||||    
T  50233383 acataacacagacgcgttgacatcaattaaattttaagaaaatgacataattcaatgtaatca 50233445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 24462349 - 24462280
Alignment:
Q  159 ggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagt 228  Q
    ||||| ||||| || |||||||||   || ||||||||| ||||||||||||||||||||||||| ||||    
T  24462349 ggacacgacacagatacgtcgacactgatcaaattttgaaaaaatgacataattcaatgtaatcacaagt 24462280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 28170368 - 28170432
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    ||||||||| ||| |||| | |||||||||||| ||||||||||||||||||||||| | ||||||    
T  28170368 gacactgacgcgtggacaccaataaaattttga-aaaatgacataattcaatgtaataacaagtgt 28170432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 38078770 - 38078669
Alignment:
Q  130 tatgaagcacggatatagacaccgacatcggacatga-cactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagt 228  Q
    |||||||||||||||  ||||| |||| |||||| || ||||||||||||||||    ||| | ||||| ||||| ||||||||||||||||| | ||||    
T  38078770 tatgaagcacggatacggacacggacaccggacacgaacactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagt 38078671  T
Q  229 gt 230  Q
    ||    
T  38078670 gt 38078669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 40176595 - 40176647
Alignment:
Q  171 gacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||| ||| | ||||||||||||||||||||| | ||||||||||||||    
T  40176595 gacacgtcaacaccgataaaattttgagaaaatgacttcattcaatgtaatca 40176647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 7988517 - 7988455
Alignment:
Q  172 acacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    |||||||||||   |||| | ||| ||||| ||||||||||||||||||||| ||||||||||    
T  7988517 acacgtcgacactgataataatttaagaaagtgacataattcaatgtaatcataagtgttggt 7988455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 24176805 - 24176871
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgag-aaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||| ||||||||| ||| | ||||||||||||| |||||||||| ||| |||||||||| ||||||    
T  24176805 gacattgacacgtcaacaccgataaaattttgagaaaaatgacatgatttaatgtaatcacaagtgt 24176871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 11571599 - 11571628
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatc 222  Q
    ||||||||||||||||||||||||||||||    
T  11571599 tttgagaaaatgacataattcaatgtaatc 11571628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 32547596 - 32547555
Alignment:
Q  253 cgacatgtgtcagacacgggacacgccttcaatcagaagtgt 294  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
T  32547596 cgacatgtgtcagacaccggacacgcctttaatctgaagtgt 32547555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 43966816 - 43966861
Alignment:
Q  189 aaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    ||||||||||||||||| | ||||||||||||||| | ||||||||    
T  43966816 aaattttgagaaaatgatacaattcaatgtaatcacatgtgttggt 43966861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 10475085 - 10475001
Alignment:
Q  130 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattca 214  Q
    ||||||||||||||||  |||| |||| |||||| |||| ||||||| ||||| |  ||| |  |||||||||| ||||||||||    
T  10475085 tatgaagcacggatatgaacacggacaccggacacgacattgacacgccgacaccgctaataacttgagaaaatcacataattca 10475001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 24806937 - 24806981
Alignment:
Q  171 gacacgtcgacatccataaaattttgagaaaatgacataattcaa 215  Q
    |||||||| ||||  |||||||||||||||||| |||||||||||    
T  24806937 gacacgtcaacatggataaaattttgagaaaataacataattcaa 24806981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 40317884 - 40317832
Alignment:
Q  170 tgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatc 222  Q
    ||||| || ||||||  |||||||||||||||||| ||||||||||| |||||    
T  40317884 tgacatgtggacatcggtaaaattttgagaaaatggcataattcaatataatc 40317832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 40747818 - 40747790
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaat 221  Q
    |||||||||||||||||||||||||||||    
T  40747818 tttgagaaaatgacataattcaatgtaat 40747790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 304
Target Start/End: Original strand, 37496683 - 37496831
Alignment:
Q  158 cggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgtatcg-tgttagacacgac 256  Q
    |||||| ||||||||||||| |||| | ||||  |||||||||||||||||||||||||||||||| |||||| ||| | || ||| ||   ||||||||    
T  37496683 cggacacgacactgacacgttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcggtgttgtgtcgttgccggacacgac 37496782  T
Q  257 atgtgtcagaca-cgggacacgccttcaatcagaagtgtccgtacaaca 304  Q
    |  |||| |||| ||||||||||||||||||| |||||||||| |||||    
T  37496783 acatgtcggacaccgggacacgccttcaatcataagtgtccgtgcaaca 37496831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 13307884 - 13307932
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13307884 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgttggt 13307932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 44362673 - 44362721
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  44362673 ataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggt 44362721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 49887755 - 49887815
Alignment:
Q  178 cgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcg 238  Q
    ||||||| ||||||||||||  |||||||||||||||||||||| |||| | |||||||||    
T  49887755 cgacatcgataaaattttgaagaaatgacataattcaatgtaattaaaaatattggtatcg 49887815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 28663499 - 28663533
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaa 220  Q
    |||||||||||||||||||||||||||||||||||    
T  28663499 ataaaattttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 43476790 - 43476844
Alignment:
Q  170 tgacacgtcgacatccataa-aattttgagaaaatgacataattcaatgtaatca 223  Q
    ||||||||||||||| |||| |||||||||| |||||||||||| ||||||||||    
T  43476790 tgacacgtcgacatcaataataattttgagagaatgacataatttaatgtaatca 43476844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 13117436 - 13117480
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||||    
T  13117436 ataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgt 13117480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 22799964 - 22799908
Alignment:
Q  168 actgacacgtcgacatccataa-aattttgagaaaatgacataattcaatgtaatca 223  Q
    ||||||||||||||| | | || |||||| |||||||||||||||||||||||||||    
T  22799964 actgacacgtcgacaacaagaataatttttagaaaatgacataattcaatgtaatca 22799908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 43093599 - 43093540
Alignment:
Q  164 tgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    ||||||||||||||| ||| |||||| | ||||| |||||| ||||||| ||||||||||    
T  43093599 tgacactgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaatca 43093540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 5654636 - 5654606
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||    
T  5654636 tttgagaaaatgacataattcaatgtaatca 5654606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 10164904 - 10164862
Alignment:
Q  188 aaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||    
T  10164904 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgt 10164862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 10546162 - 10546192
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||    
T  10546162 tttgagaaaatgacataattcaatgtaatca 10546192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 13484029 - 13484075
Alignment:
Q  185 cataaaattttgagaaaatgacataattc-aatgtaatcaaaagtgt 230  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  13484029 cataaaattttgagaaaataacataattcaaatgtaatcacaagtgt 13484075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 18513286 - 18513256
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||    
T  18513286 tttgagaaaatgacataattcaatgtaatca 18513256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 20743350 - 20743284
Alignment:
Q  166 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttg 232  Q
    ||||||||||| |||||   |||| | |||||||||||||||||||||| |||||||| | ||||||    
T  20743350 acactgacacgccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttg 20743284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 34589751 - 34589721
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||    
T  34589751 tttgagaaaatgacataattcaatgtaatca 34589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 903936 - 904013
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgtatc-gtgttagacacgacatgtgtcagacac 269  Q
    ||||||||||| |||||||||| |||||| | | || |  |||||||||| ||||| ||||||||||||||| |||||    
T  903936 tttgagaaaatcacataattcagtgtaattatatgtatcagtatcgtatcggtgttggacacgacatgtgtccgacac 904013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 10634997 - 10635034
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  10634997 ataaaattttgaaaaaatgacataattcaatgttatca 10635034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 30982923 - 30982834
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgtatc-gtgttagacacgacatgtgtcagaca-cgggacacgcct 280  Q
    ||||||||||| ||||| |||| |||||| | |||||| ||| |||| || |||| |||||||||| ||||| |||| ||||||||||||    
T  30982923 tttgagaaaatcacatatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcct 30982834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 39619080 - 39619043
Alignment:
Q  269 cgggacacgccttcaatcagaagtgtccgtacaacata 306  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  39619080 cgggacacaccttcaatcagaagtgtccgtgcaacata 39619043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 56049844 - 56049920
Alignment:
Q  146 agacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||| |||| |||||| ||||| ||||| |||||| | |||| | ||||||||| ||||||| |||||||||||||    
T  56049844 agacacggacaccggacacgacacggacacatcgacaccgataataatttgagaaa-tgacatagttcaatgtaatca 56049920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 26276054 - 26276026
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaat 221  Q
    |||||||||||||||||||||||||||||    
T  26276054 tttgagaaaatgacataattcaatgtaat 26276026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 35062452 - 35062499
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    |||||||||||| ||||| | ||||||||||||||||| ||||||||||    
T  35062452 ataaaattttga-aaaataatataattcaatgtaatcataagtgttggt 35062499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 10031520 - 10031623
Alignment:
Q  129 ttatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagt 228  Q
    |||||||||||||| | |||||| || | | ||||||||||  |||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  10031520 ttatgaagcacggacacagacacggataccagacatgacacaaacacgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagt 10031619  T
Q  229 gttg 232  Q
    ||||    
T  10031620 gttg 10031623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 6751954 - 6751890
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||||||||||| | || || |||||||||||||||||||||||||||||||||||||| ||||||    
T  6751954 gacactgacacgac-acgtcgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 6751890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 19369824 - 19369877
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 239  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| ||||    
T  19369824 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgt 19369877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 10421710 - 10421774
Alignment:
Q  154 acatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgta 219  Q
    |||||||||| |||||||||||||||||| |||||  ||||| |||||||||||||||| ||||||    
T  10421710 acatcggacacgacactgacacgtcgaca-ccatagtattttaagaaaatgacataattgaatgta 10421774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 5579649 - 5579705
Alignment:
Q  174 acgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    ||||||||| | |||||||||||||||||||||||| ||||||||| ||| ||||||    
T  5579649 acgtcgacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 5579705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 15443682 - 15443737
Alignment:
Q  166 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 221  Q
    ||||||||||||||||||| |||| | ||||||||||| |||||||||||| ||||    
T  15443682 acactgacacgtcgacatcaataataatttgagaaaataacataattcaatataat 15443737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 29959182 - 29959217
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaat 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  29959182 ataaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 17168845 - 17168935
Alignment:
Q  130 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaa 220  Q
    |||||||||| |||  |||||| |||| || ||| |||||  ||||||||||||  |||| | ||||| ||||||||||||||||||||||    
T  17168845 tatgaagcacagattcagacacggacaccgaacacgacacaaacacgtcgacattgataataatttgaaaaaatgacataattcaatgtaa 17168935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 22745945 - 22746017
Alignment:
Q  166 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 239  Q
    |||||||||| |||||| | |||||||||||||||||||  ||| ||||||||||||| |||||| ||| ||||    
T  22745945 acactgacacatcgaca-cgataaaattttgagaaaatgttatatttcaatgtaatcacaagtgtcggtgtcgt 22746017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 34868229 - 34868172
Alignment:
Q  166 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    ||||| ||||||||||| | |||||||||||||| |||  ||||||||||||||||||    
T  34868229 acactaacacgtcgacaccgataaaattttgagagaatatcataattcaatgtaatca 34868172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 7377929 - 7378021
Alignment:
Q  129 ttatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 221  Q
    ||||||||||||||||  ||| | |||| ||||||  |||| |||||  ||||| |  ||||| ||||||||||| |||||||||||||||||    
T  7377929 ttatgaagcacggatacggacccagacaccggacacaacacagacaccccgacaccgctaaaaatttgagaaaatcacataattcaatgtaat 7378021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 5970216 - 5970125
Alignment:
Q  130 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 221  Q
    |||||||||| ||||  ||||| |||| |||||||||||| ||||||||||||    ||| | ||||| ||||| |||||||||| ||||||    
T  5970216 tatgaagcacagatacggacacggacaccggacatgacacggacacgtcgacacagttaataatttgaaaaaatcacataattcagtgtaat 5970125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 5635940 - 5635902
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaa 224  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  5635940 ataaaattttaagaaaatgacataattcaatataatcaa 5635902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 8623179 - 8623249
Alignment:
Q  153 gacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||| |||||| ||||||||||||| |||| | |||| | ||| |||||||||||| ||| ||||||||||    
T  8623179 gacaccggacacgacactgacacgttgacaccgataacaattttagaaaatgacatcattgaatgtaatca 8623249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 9024221 - 9024191
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||    
T  9024221 tttgagaaaatgacataattcaatgtaatca 9024191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 10157998 - 10158028
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||    
T  10157998 tttgagaaaatgacataattcaatgtaatca 10158028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 13211354 - 13211296
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    ||||| |||||||||||||  |||| | |||||||||||||||||||| ||| ||||||    
T  13211354 gacaccgacacgtcgacattgataataatttgagaaaatgacataatttaatataatca 13211296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 16388343 - 16388250
Alignment:
Q  128 tttatgaagcacggatatagacaccgacatcggaca-tgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 221  Q
    |||||||||||| |||| |||||| |||||||||||  |||||||||||||||| |  || || | ||||| ||||| |||||||||| ||||||    
T  16388343 tttatgaagcaccgatagagacacggacatcggacacggacactgacacgtcgataagca-aataatttgaaaaaatcacataattcagtgtaat 16388250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 29670886 - 29670948
Alignment:
Q  172 acacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    ||||||||| |||||| | | |||||||||||||||| ||||||||||| || | ||||||||    
T  29670886 acacgtcgatatccatcataatttgagaaaatgacatgattcaatgtaaccacatgtgttggt 29670948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 1334668 - 1334705
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  1334668 ataaaattttgaaaaaaggacataattcaatgtaatca 1334705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 4859185 - 4859128
Alignment:
Q  166 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    ||||| ||| ||||||| | |||| | ||||||||||||||||||| |||||||||||    
T  4859185 acactaacatgtcgacaccaataataatttgagaaaatgacataatccaatgtaatca 4859128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 16516892 - 16516985
Alignment:
Q  130 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||| || | ||||||||||| |  |||  |||||||||| |||  | | |||||||||||||||||  | |||||||||||||||||    
T  16516892 tatgaagcactgacacagacaccgacaacaaacacaacactgacacttcgtaaccgataaaattttgagaaaactatataattcaatgtaatca 16516985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 31430287 - 31430324
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  31430287 ataaaattttgagaaaatgacatgattaaatgtaatca 31430324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 16503682 - 16503730
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    |||||||||||||||||  | |||||||||||||||||  |||||||||    
T  16503682 ataaaattttgagaaaactatataattcaatgtaatcactagtgttggt 16503730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 19369889 - 19369921
Alignment:
Q  272 gacacgccttcaatcagaagtgtccgtacaaca 304  Q
    ||||||||||||||||||||||||||| |||||    
T  19369889 gacacgccttcaatcagaagtgtccgtgcaaca 19369921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 18186 - 18112
Alignment:
Q  160 gacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    |||| |||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  18186 gacacgacactgacacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgttggt 18112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 43586079 - 43586013
Alignment:
Q  164 tgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    ||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||| ||||||    
T  43586079 tgacactgacacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 43586013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 14450772 - 14450710
Alignment:
Q  243 gtgttagacacgacatgtgtcagacac-gggacacgccttcaatcagaagtgtccgtacaaca 304  Q
    |||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  14450772 gtgtcagacaggacatgtgtcagacaccgggacacgtcttcaatcagaagtgtccgtgcaaca 14450710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 24067263 - 24067308
Alignment:
Q  189 aaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||    
T  24067263 aaattttgtgaaaatgacataattcaatgtaatcacaagtgttggt 24067308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 42665594 - 42665663
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    |||| ||||||||||| ||| |||||||||||| || ||||||| |||||||||||||| | ||||||||    
T  42665594 gacattgacacgtcgatatcgataaaattttgaaaagatgacatgattcaatgtaatcacatgtgttggt 42665663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 11439782 - 11439850
Alignment:
Q  166 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    ||||||||||||| | ||| |||||||| ||||||||| |||||||||| |||||||| |||| |||||    
T  11439782 acactgacacgtcaaaatcgataaaattatgagaaaataacataattcagtgtaatcacaagtattggt 11439850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 13501130 - 13501086
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||    
T  13501130 ataaaattttaagaaaatgacataattcaatgtaatcacaagtgt 13501086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 14450845 - 14450803
Alignment:
Q  188 aaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||||||||||||||| ||||||||||||||||||| ||||||    
T  14450845 aaaattttgagaaaatcacataattcaatgtaatcacaagtgt 14450803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 18570986 - 18571016
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||    
T  18570986 tttgagaaaatgacataattcaatgtaatca 18571016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 44984716 - 44984658
Alignment:
Q  172 acacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    ||||||||||| | || ||||||||| ||||||| |||||||||||| |||| ||||||    
T  44984716 acacgtcgacacctatcaaattttgaaaaaatgatataattcaatgtgatcacaagtgt 44984658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 10535804 - 10535767
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  10535804 tttgagaaaatgacataattcagtgtaatcataagtgt 10535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 18512194 - 18512157
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||| | |||||||||||||||||    
T  18512194 ataaaattttgagaaaataatataattcaatgtaatca 18512157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 26787850 - 26787813
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  26787850 ataaaaatttgagaaaatgacataattcgatgtaatca 26787813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 37211938 - 37211893
Alignment:
Q  185 cataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||||||||| |||||||||||| ||||||||||||| | ||||||    
T  37211938 cataaaatttcgagaaaatgacacaattcaatgtaattacaagtgt 37211893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 6180910 - 6180874
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatcaaaagtg 229  Q
    |||||||||||||||| |||||||||||||| |||||    
T  6180910 tttgagaaaatgacatgattcaatgtaatcataagtg 6180874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 12748653 - 12748737
Alignment:
Q  148 acaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttg 232  Q
    |||| |||| |||||| ||||| ||||||  |||||  |||| | ||||||||||||||||| |||| |||||||| | ||||||    
T  12748653 acacagacaccggacacgacacggacacgctgacatggataataatttgagaaaatgacatagttcagtgtaatcataggtgttg 12748737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 19613677 - 19613613
Alignment:
Q  174 acgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcg 238  Q
    |||||||||  ||||| | ||||||||||| ||||||||||||||||| | | ||||| ||||||    
T  19613677 acgtcgacactcataataatttgagaaaataacataattcaatgtaatgatatgtgttagtatcg 19613613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 37491907 - 37491863
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||||||||||||||||| || |||||||||||||| ||| ||||    
T  37491907 ataaaattttgagaaaataacttaattcaatgtaattaaatgtgt 37491863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 40681996 - 40682024
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaat 221  Q
    |||||||||||||||||||||||||||||    
T  40681996 tttgagaaaatgacataattcaatgtaat 40682024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 131 - 239
Target Start/End: Original strand, 1885519 - 1885633
Alignment:
Q  131 atgaagcacggatatagacaccgacatcggacatgacactgacacg------tcgacatccataaaattttgagaaaatgacataattcaatgtaatcaa 224  Q
    |||||||||||||| |||||| |||| |||||| |||||||| |||      ||||||   |||||||||||| |||||||||||||||||||||||||     
T  1885519 atgaagcacggatacagacacggacaccggacacgacactgatacggacacatcgacacggataaaattttgaaaaaatgacataattcaatgtaatcac 1885618  T
Q  225 aagtgttggtatcgt 239  Q
    |||||| ||| ||||    
T  1885619 aagtgtcggtgtcgt 1885633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 5937495 - 5937429
Alignment:
Q  164 tgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||||| |||||||| |||   |||||||||||||||||||||||||||||||||||||| ||||||    
T  5937495 tgacacagacacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 5937429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 2144592 - 2144554
Alignment:
Q  185 cataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2144592 cataaaattttgagaaaatgacataattcaatgtaatca 2144554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 293
Target Start/End: Complemental strand, 22801813 - 22801684
Alignment:
Q  166 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgtatc-gtgttagacacgacatgtgtca 264  Q
    |||| |||||||| ||| | || ||||||||||| |||||||||||||| |||||||| |||||| ||| |  | || ||||  ||||| |||  ||||     
T  22801813 acacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccacacttgtcg 22801714  T
Q  265 gacac-gggacacgccttcaatcagaagtg 293  Q
    ||||| ||||||||||||||||||||||||    
T  22801713 gacactgggacacgccttcaatcagaagtg 22801684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 298
Target Start/End: Original strand, 25956464 - 25956554
Alignment:
Q  198 gaaaatgacataattcaatgtaatcaaaagtgttggtatcgtatcgtgttagacacgacatgtgtcagacacgggacacgccttcaatcagaagtgtccg 297  Q
    |||||||||||||||||||||||||| |||||| ||| |||          ||||||| |  |||| |||||||||||||||||||||||||||||||||    
T  25956464 gaaaatgacataattcaatgtaatcacaagtgtcggtgtcg----------gacacgatacatgtcggacacgggacacgccttcaatcagaagtgtccg 25956553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 44317395 - 44317294
Alignment:
Q  129 ttatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagt 228  Q
    |||||||||||||||| | |||  |||| | |||| ||| || |||||| ||||   |||||||||| | ||||||||||||||||||||||||| ||||    
T  44317395 ttatgaagcacggatacaaacatggacacctgacacgaccctaacacgttgacactgataaaattttaaaaaaatgacataattcaatgtaatcataagt 44317296  T
Q  229 gt 230  Q
    ||    
T  44317295 gt 44317294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 48964114 - 48964061
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 239  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||| ||||    
T  48964114 ataaaattgtgagaaaatgacataattcaatttaatcacaagtgttggtgtcgt 48964061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 42720994 - 42720907
Alignment:
Q  134 aagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 221  Q
    |||||||||||  ||||| |||||| |||||||||||||||||| |||| |  ||| | ||||| ||||| |||||||| ||||||||    
T  42720994 aagcacggatacggacacagacatcagacatgacactgacacgttgacaccgctaataatttgaaaaaatcacataattaaatgtaat 42720907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 2143902 - 2143868
Alignment:
Q  189 aaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatca 2143868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 9050201 - 9050148
Alignment:
Q  170 tgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    ||||||||||||||  |||||||||||| ||||||||||| |||||| ||||||    
T  9050201 tgacacgtcgacatagataaaattttgaaaaaatgacatagttcaatataatca 9050148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 6091328 - 6091372
Alignment:
Q  180 acatccataaaattttgagaaaatgacataattcaatgtaatcaa 224  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||    
T  6091328 acatcaataaaattttgagaaaatgatataattcaatataatcaa 6091372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 31377000 - 31377036
Alignment:
Q  179 gacatccataaaattttgagaaaatgacataattcaa 215  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31377000 gacatcaataaaattttgagaaaatgacataattcaa 31377036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 38134451 - 38134421
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||    
T  38134451 tttgagaaaatgacataattcaatgtaatca 38134421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 44172935 - 44172905
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||    
T  44172935 tttgagaaaatgacataattcaatgtaatca 44172905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 10893392 - 10893347
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcg 238  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||    
T  10893392 tttgagaaaatgacataattgaatgtaatcgcatgtgttggtatcg 10893347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 29910689 - 29910754
Alignment:
Q  160 gacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaa 225  Q
    |||||||||||||||||| |||| |  |  || ||||||||||||||| |||| ||||||||||||    
T  29910689 gacatgacactgacacgtggacaccggtggaaatttgagaaaatgacagaattgaatgtaatcaaa 29910754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 30516430 - 30516373
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatc 222  Q
    ||||||||||||||||||   | || | ||||||||||||| ||||||||||||||||    
T  30516430 gacactgacacgtcgacactaacaataatttgagaaaatgatataattcaatgtaatc 30516373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 31808580 - 31808508
Alignment:
Q  166 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 239  Q
    |||||||||||||| || | |||| | ||||||||||||||| || |||||||||||| | |||||||| ||||    
T  31808580 acactgacacgtcg-caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtcgt 31808508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 35238236 - 35238199
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  35238236 ataatattttgagaaaatgacataattcaatataatca 35238199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 36196786 - 36196835
Alignment:
Q  185 cataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    ||||||||||||||||||  |||||||||||  |||||| ||||||||||    
T  36196786 cataaaattttgagaaaacaacataattcaacataatcacaagtgttggt 36196835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 36314672 - 36314631
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    ||||||||||||||||| ||||||||||||| | ||||||||    
T  36314672 tttgagaaaatgacatatttcaatgtaatcatatgtgttggt 36314631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 10702595 - 10702552
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    ||||||||||||||||||||||| |||||||||||| | ||||||    
T  10702595 ataaaattttgagaaaatgacat-attcaatgtaattataagtgt 10702552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 18678160 - 18678192
Alignment:
Q  191 attttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||| ||||||    
T  18678160 attttgagaaaatgacataattcaatataatca 18678192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 24295215 - 24295145
Alignment:
Q  160 gacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||| |||||||||| ||||||||| |||||||| ||||||||||||| |||| |||||||||| ||||||    
T  24295215 gacacgacactgacatgtcgacatcgataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgt 24295145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 26915314 - 26915248
Alignment:
Q  164 tgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||||| ||||||||||||   ||||||||||||||||||||||||||| |||||||||| ||||||    
T  26915314 tgacacggacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 26915248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 31119066 - 31119138
Alignment:
Q  153 gacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||| |||||||||||||||||| || ||||     ||||||||||||||||||||||||||||||||||| ||||||    
T  31119066 gacaccggacatgacactgacacatctacat-----aaattttgagaaaatgacataattcaatgtaatcacaagtgt 31119138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 27733854 - 27733902
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  27733854 ataaaattttgagaaaatgatataattcaatgtaatcacaagtgttggt 27733902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 42874509 - 42874573
Alignment:
Q  166 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||| |||||||||||| |  ||| ||||||||||||||||||||||||||||||||| ||||||    
T  42874509 acacggacacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgt 42874573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 4786445 - 4786355
Alignment:
Q  131 atgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 221  Q
    |||||||||||||| |||||| |||| || ||| |||||||||||| ||||| |  ||| | ||| ||||||| |||||||||| ||||||    
T  4786445 atgaagcacggatacagacactgacaccgaacacgacactgacacgccgacaccattaataatttaagaaaatcacataattcagtgtaat 4786355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 24208757 - 24208701
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgtatcg 243  Q
    |||||||||| ||||||||||||| ||||||| |||||  ||||||||||||||||||    
T  24208757 ataaaattttaagaaaatgacatatttcaatg-aatcactagtgttggtatcgtatcg 24208701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 6960728 - 6960692
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatc 222  Q
    ||||||||||||||||||||||||||| |||||||||    
T  6960728 ataaaattttgagaaaatgacataatttaatgtaatc 6960692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 22600515 - 22600579
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtg 229  Q
    ||||||||||| || ||| | |||||||||  |||||||||||||||||||| |||||| |||||    
T  22600515 gacactgacacatcaacaccaataaaatttaaagaaaatgacataattcaatataatcacaagtg 22600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 34074030 - 34073986
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||    
T  34074030 ataaaattttgaaaaaatgacataatttaatgtaatcataagtgt 34073986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 1639497 - 1639532
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaat 221  Q
    |||| |||||||||||||||||||||||||||||||    
T  1639497 ataatattttgagaaaatgacataattcaatgtaat 1639532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 10497890 - 10497815
Alignment:
Q  164 tgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 239  Q
    |||||| |||||| |||||   |||||||||||||||||| ||||||||  ||||||||| ||||||  |||||||    
T  10497890 tgacacagacacgccgacacggataaaattttgagaaaataacataatttgatgtaatcacaagtgtcagtatcgt 10497815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 29198524 - 29198494
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||    
T  29198524 tttgagaaaatgacataattcaatgtaatca 29198494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 34739134 - 34739080
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgta 219  Q
    ||||| ||||||| |||||| |||| | | |||||||||||||||||||||||||    
T  34739134 gacaccgacacgttgacatcgataataatatgagaaaatgacataattcaatgta 34739080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 1591311 - 1591340
Alignment:
Q  191 attttgagaaaatgacataattcaatgtaa 220  Q
    ||||||||||||||||||||||||||||||    
T  1591311 attttgagaaaatgacataattcaatgtaa 1591340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 3508066 - 3508107
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    ||||||||||| ||||||||||||||||||| | ||||||||    
T  3508066 tttgagaaaataacataattcaatgtaatcatatgtgttggt 3508107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 9936806 - 9936867
Alignment:
Q  171 gacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttg 232  Q
    |||||||||||||| |||| | ||| ||||||||| |||||||||| |||||| | ||||||    
T  9936806 gacacgtcgacatcgataataatttaagaaaatgatataattcaatataatcatatgtgttg 9936867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 11246145 - 11246096
Alignment:
Q  172 acacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 221  Q
    |||||| | |||| |||||||||||||||||| ||||||| |||||||||    
T  11246145 acacgttggcatcgataaaattttgagaaaataacataatgcaatgtaat 11246096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 14227210 - 14227263
Alignment:
Q  167 cactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaa 220  Q
    |||||||||||| ||| | |||| | ||||||||||| ||||||||||||||||    
T  14227210 cactgacacgtcaacaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 10441217 - 10441245
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaat 221  Q
    |||||||||||||||||||||||||||||    
T  10441217 tttgagaaaatgacataattcaatgtaat 10441245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 14943170 - 14943114
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 221  Q
    ||||||||||| | |||| | ||||||||||||||||||||| | ||||| ||||||    
T  14943170 gacactgacacattgacaccaataaaattttgagaaaatgacttgattcagtgtaat 14943114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 34201091 - 34201063
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaat 221  Q
    |||||||||||||||||||||||||||||    
T  34201091 tttgagaaaatgacataattcaatgtaat 34201063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 35014847 - 35014879
Alignment:
Q  271 ggacacgccttcaatcagaagtgtccgtacaac 303  Q
    ||||||||||||||||||||||||| |||||||    
T  35014847 ggacacgccttcaatcagaagtgtcggtacaac 35014879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 41686793 - 41686761
Alignment:
Q  272 gacacgccttcaatcagaagtgtccgtacaaca 304  Q
    ||||||||||||||||||||||||| |||||||    
T  41686793 gacacgccttcaatcagaagtgtccatacaaca 41686761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 26205833 - 26205775
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||||    
T  26205833 gacactgacacgtcgataccgataaaattttgagaaaatgacataattcagtgtaatca 26205775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 30080553 - 30080511
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagt 228  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  30080553 ataaaattttgagaaaatgacataattcaatgtaatcacaagt 30080511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 16207641 - 16207595
Alignment:
Q  188 aaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  16207641 aaaatttagagaaattgacataattcaatgtaatcacaagtgttggt 16207595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 32444752 - 32444826
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 239  Q
    |||||||||||||| ||| |  ||| | |||||||| |||||||||||||||||||||||| |||| ||| ||||    
T  32444752 gacactgacacgtcaacaccattaacaatttgagaagatgacataattcaatgtaatcaaatgtgtcggtgtcgt 32444826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 42192283 - 42192320
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||| |||||||||||||||||||||||    
T  42192283 ataaaattttgagacaatgacataattcaatgtaatca 42192320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 309150 - 309190
Alignment:
Q  171 gacacgtcgacatccataaaattttgagaaaatgacataat 211  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  309150 gacacgtcgacaccgataaaattttgagaaaatgacataat 309190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 21319997 - 21319953
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||    
T  21319997 ataaaattttgaaaaaatgatataattcaatgtaatcacaagtgt 21319953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 28296320 - 28296388
Alignment:
Q  171 gacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 239  Q
    |||| ||||||| | |||| | ||||||||||||||||||||||||||| ||| | |||||||| ||||    
T  28296320 gacaagtcgacaccgataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgtcgt 28296388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 11596521 - 11596470
Alignment:
Q  172 acacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    ||||||||| | | |||| | |||||||||||||||||||||||||||||||    
T  11596521 acacgtcgataccgataataatttgagaaaatgacataattcaatgtaatca 11596470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 19167651 - 19167584
Alignment:
Q  164 tgacactgacacgtcgacatccataaaattttgagaaaa-tgacataattcaatgtaatcaaaagtgt 230  Q
    |||||| ||||||| |||| | |||||||||||| |||| ||||| ||||||||||||||| ||||||    
T  19167651 tgacacagacacgttgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgt 19167584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 38784813 - 38784868
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgtat 241  Q
    |||||||| ||| ||||||| ||||||||||||||||| ||||||  |||||||||    
T  38784813 ataaaattgtgaaaaaatgatataattcaatgtaatcacaagtgtcagtatcgtat 38784868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 14840189 - 14840126
Alignment:
Q  158 cggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    ||||||||||||||||||   |||||  |||||||||||||| |||| |||||||||| |||||||    
T  14840189 cggacatgacactgacact--gacatggataaaattttgagacaatggcataattcaaagtaatca 14840126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 43208319 - 43208289
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||||    
T  43208319 tttgagaaaatgacataattcaatgtaatca 43208289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 2039921 - 2039864
Alignment:
Q  166 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||| |||||||||||| |  ||| | |||||||||||||||| ||||||||||||||    
T  2039921 acacggacacgtcgacaccggtaataatttgagaaaatgacatgattcaatgtaatca 2039864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 9031914 - 9031881
Alignment:
Q  271 ggacacgccttcaatcagaagtgtccgtacaaca 304  Q
    |||||||||||||||||||||||||||| |||||    
T  9031914 ggacacgccttcaatcagaagtgtccgtgcaaca 9031881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 10010561 - 10010598
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  10010561 ataaaattttgaaaaaatgacataattcattgtaatca 10010598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 31264452 - 31264489
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  31264452 tttgagaaaatgacataattcagtgtaatcataagtgt 31264489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 41558699 - 41558662
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  41558699 tttgagaaaatgacataattcaatgtaattaaatgtgt 41558662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 10009842 - 10009870
Alignment:
Q  195 tgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||||||||||||||||||||    
T  10009842 tgagaaaatgacataattcaatgtaatca 10009870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 38749635 - 38749567
Alignment:
Q  166 acactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggt 234  Q
    |||| |||| ||||||| | |||| | ||||| ||||||||||||||||||||||| | | ||||||||    
T  38749635 acacggacatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggt 38749567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 8949 - 8999
Alignment:
Q  180 acatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    ||||| |||||||||||||||||||||||||||||| ||||||| ||||||    
T  8949 acatcgataaaattttgagaaaatgacataattcaacgtaatcacaagtgt 8999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 49179780 - 49179714
Alignment:
Q  173 cacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 239  Q
    |||||||||| | |||||||||||||||| ||||||||||| ||||||||| |||||| ||| ||||    
T  49179780 cacgtcgacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcggtgtcgt 49179714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 3180872 - 3180793
Alignment:
Q  130 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacata 209  Q
    ||||||||||||| | | |||| |||| |||||| |||||||||||||| |||   |||||||||| |||||||||||||    
T  3180872 tatgaagcacggacacaaacacggacaccggacaggacactgacacgtctacaatgataaaattttaagaaaatgacata 3180793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 14338535 - 14338498
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||||||| |||||||||||||||||||||||||    
T  14338535 ataaaattttgaaaaaatgacataattcaatgtaatca 14338498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 15864252 - 15864305
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgttggtatcgt 239  Q
    ||||| ||||||||||||||||||||||||| ||||||  ||||||||| ||||    
T  15864252 ataaagttttgagaaaatgacataattcaatataatcattagtgttggtgtcgt 15864305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 41319388 - 41319327
Alignment:
Q  160 gacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 221  Q
    |||| ||||| |||||||||||| | |||| | ||||| |||||||||||||||||||||||    
T  41319388 gacacgacacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 39756187 - 39756239
Alignment:
Q  130 tatgaagcacggatatagacaccgacatcggacatgacactgacacgtcgaca 182  Q
    |||||||||||||||| || || ||||||||||| |||||||||||| |||||    
T  39756187 tatgaagcacggatatggatacggacatcggacacgacactgacacgccgaca 39756239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 48202342 - 48202286
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaat 221  Q
    |||| ||||||| |||||||||||| | ||||||||||| |||||||| ||||||||    
T  48202342 gacattgacacgccgacatccataatagtttgagaaaatcacataatttaatgtaat 48202286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 304
Target Start/End: Complemental strand, 34834906 - 34834871
Alignment:
Q  269 cgggacacgccttcaatcagaagtgtccgtacaaca 304  Q
    |||||||||||||||||||||||||||||| |||||    
T  34834906 cgggacacgccttcaatcagaagtgtccgtgcaaca 34834871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 52558180 - 52558143
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  52558180 ataaaaatttgagaaaaggacataattcaatgtaatca 52558143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 21149081 - 21149113
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaatcaaa 225  Q
    |||||||||||||||||||||| ||||||||||    
T  21149081 tttgagaaaatgacataattcagtgtaatcaaa 21149113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 34409409 - 34409357
Alignment:
Q  171 gacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||||| ||| | |||| | || ||||||||||||||||||||||||||||    
T  34409409 gacacgtcaacaccgataatacttcgagaaaatgacataattcaatgtaatca 34409357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 40017414 - 40017386
Alignment:
Q  193 tttgagaaaatgacataattcaatgtaat 221  Q
    |||||||||||||||||||||||||||||    
T  40017414 tttgagaaaatgacataattcaatgtaat 40017386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 240113 - 240036
Alignment:
Q  146 agacaccgacatcggacatgacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatca 223  Q
    |||||| |||| |||||||||||| |||| || |||| | |||| | ||||||||||| | |||||||||||||||||    
T  240113 agacacggacaccggacatgacacggacatgttgacaactataataatttgagaaaataatataattcaatgtaatca 240036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 8749 - 8705
Alignment:
Q  186 ataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    ||||||||||||||||||||||| ||||||||||| || ||||||    
T  8749 ataaaattttgagaaaatgacatgattcaatgtaaccacaagtgt 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 8691 - 8645
Alignment:
Q  259 gtgtcagacac-gggacacgccttcaatcagaagtgtccgtacaaca 304  Q
    ||||||||||| |||||| |||||||||||||||||||||| |||||    
T  8691 gtgtcagacaccgggacatgccttcaatcagaagtgtccgtgcaaca 8645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 225341 - 225276
Alignment:
Q  165 gacactgacacgtcgacatccataaaattttgagaaaatgacataattcaatgtaatcaaaagtgt 230  Q
    |||||||||||| |||||   |||| | ||||||||||||||||||| ||||||||| | ||||||    
T  225341 gacactgacacgccgacacagataataatttgagaaaatgacataatacaatgtaattataagtgt 225276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University