View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0961_low_14 (Length: 436)

Name: NF0961_low_14
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0961_low_14
NF0961_low_14
[»] chr6 (6 HSPs)
chr6 (42-436)||(34179845-34180239)
chr6 (286-411)||(32332709-32332834)
chr6 (372-428)||(19255883-19255939)
chr6 (372-428)||(33640161-33640217)
chr6 (355-428)||(900695-900768)
chr6 (372-428)||(503373-503429)
[»] chr1 (3 HSPs)
chr1 (42-419)||(52470032-52470415)
chr1 (372-428)||(25504834-25504890)
chr1 (371-419)||(20987416-20987464)
[»] chr3 (4 HSPs)
chr3 (268-432)||(9509893-9510057)
chr3 (268-432)||(9517868-9518032)
chr3 (345-424)||(17620266-17620345)
chr3 (363-413)||(28308710-28308760)
[»] chr7 (10 HSPs)
chr7 (355-428)||(11338973-11339046)
chr7 (283-428)||(23054805-23054950)
chr7 (355-424)||(28173821-28173890)
chr7 (283-428)||(47923849-47923994)
chr7 (372-428)||(45992819-45992875)
chr7 (363-410)||(8722982-8723029)
chr7 (363-409)||(8753248-8753294)
chr7 (367-428)||(25924308-25924369)
chr7 (371-419)||(20349206-20349254)
chr7 (371-407)||(27544475-27544511)
[»] chr5 (3 HSPs)
chr5 (345-428)||(23923065-23923148)
chr5 (376-419)||(34338130-34338173)
chr5 (372-428)||(11574535-11574591)
[»] chr2 (1 HSPs)
chr2 (332-428)||(18489011-18489107)
[»] chr8 (2 HSPs)
chr8 (372-428)||(4987906-4987962)
chr8 (163-244)||(26979879-26979960)
[»] chr4 (6 HSPs)
chr4 (372-428)||(19647952-19648008)
chr4 (353-424)||(28713163-28713234)
chr4 (371-432)||(29553577-29553638)
chr4 (363-412)||(46543213-46543262)
chr4 (372-428)||(19114679-19114735)
chr4 (372-428)||(49926107-49926163)


Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 42 - 436
Target Start/End: Original strand, 34179845 - 34180239
Alignment:
Q  42 tgccaaatagatccgaaattgtcgcaatgaagaaacaaatgttgagcagtttctatctgaccacatcccgctgtacaaaaagtgttctcaacagatatta 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34179845 tgccaaatagatccgaaattgtcgcaatgaagaaacaaatgttgagcagtttctacctgaccacatcccgctgtacaaaaagtgttctcaacagatatta 34179944  T
Q  142 tactannnnnnnattggaaatctgtcctgaagcagacgccaagctaaaatagacacttttaacggcacctgagagtgacacatgggtttctctgaagcat 241  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34179945 tactatttttttattggaaatctgtcctgaagcagacgccaagctaaaatagacacttttaacggcacctgagagtgacacatgggtttctctgaagcat 34180044  T
Q  242 ccaagaattgtgaatcattagaagtaagcacctgatatctcgagcgcaccgagtaaccccccacaacatcggggtgccaccgctagtaaactgaaacacc 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34180045 ccaagaattgtgaatcattagaagtaagcacctgatatctcgagcgcaccgagtaaccccccacaacatcggggtgccaccgctagtaatctgaaacacc 34180144  T
Q  342 aagctgcaatatgacattagaaagtaagatcctacactccactactatctcctcctcccacgcccacaacctcatcctacactgccatgccccac 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34180145 aagctgcaatatgacattagaaagtaagatcctacactccactactatctcctcctcccacgcccacaacctcatcctccactgccatgccccac 34180239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 411
Target Start/End: Original strand, 32332709 - 32332834
Alignment:
Q  286 cgcaccgagtaaccccccacaacatcggggtgccaccgctagtaaactgaaacaccaagctgcaatatgacattagaaagtaagatcctacactccacta 385  Q
    ||||||||||||||||||||||  ||||| |||||| || ||| | ||||||||  |  ||||||  | ||||||||  ||||| |||||| || | |||    
T  32332709 cgcaccgagtaaccccccacaatgtcgggatgccactgccagttatctgaaacattagactgcaaagtaacattagattgtaagttcctacgcttcgcta 32332808  T
Q  386 ctatctcctcctcccacgcccacaac 411  Q
      ||||||||||||||||||||||||    
T  32332809 tcatctcctcctcccacgcccacaac 32332834  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 19255883 - 19255939
Alignment:
Q  372 cctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    ||||||||||||||  ||||||||||||||||||||||| |||  ||| ||||||||    
T  19255883 cctacactccactaacatctcctcctcccacgcccacaatctccgcctccactgcca 19255939  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 33640161 - 33640217
Alignment:
Q  372 cctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    ||||||||||||||  ||||||||||||||||||||||| |||  ||| ||||||||    
T  33640161 cctacactccactaacatctcctcctcccacgcccacaatctccgcctccactgcca 33640217  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 428
Target Start/End: Complemental strand, 900768 - 900695
Alignment:
Q  355 acattagaaagtaagatcctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    ||||||| |||||| | |||||||||| |||  | ||| ||||||||||||||||||||| || | ||||||||    
T  900768 acattagcaagtaacaacctacactccgctaacaactcatcctcccacgcccacaacctcctctttcactgcca 900695  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 503429 - 503373
Alignment:
Q  372 cctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    ||||||||||||||  |||||||||||||||||| |||| |||  ||| ||||||||    
T  503429 cctacactccactaacatctcctcctcccacgcctacaatctccgcctccactgcca 503373  T

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Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 42 - 419
Target Start/End: Complemental strand, 52470415 - 52470032
Alignment:
Q  42 tgccaaatagatccgaaattgtcgcaatgaagaaacaaatgttgagcagtttctatctgaccacatcccgctgtacaaaaagtgttctcaacagat---- 137  Q
    |||||||  ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| || ||| ||||||| ||| ||        
T  52470415 tgccaaagtgatccgaaaatgtcacaatgaagaaacaaatgttgagcagtttctacctgaccacaccccgctgtgcagaaaatgttctc-acatatcgcg 52470317  T
Q  138 ----attatactannnnnnnattggaaatctgtcctgaagcagacgccaagctaaaatagacacttttaacggcacctgagagtgacacatgggtttctc 233  Q
        | || | ||        |||| ||||| ||||||| |||||| |  |||||||| ||||| |||||| ||||||||||||| |  ||  | ||||     
T  52470316 atgtagtaaattattttttg-ttggcaatctctcctgaaacagacgtcgcgctaaaattgacacctttaacagcacctgagagtgccttataagattctt 52470218  T
Q  234 tgaagcatccaagaattgtgaatcattagaagtaagcacctgatatctcgagcgcaccgagtaaccccccacaacatcggggtgccaccgctagtaaact 333  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||| ||||||||||||||||||||||  || | |||  |    
T  52470217 tgaagcatccaagaactgtgaatcattagaagtaagcacctgatatctcgatcgcatcaagtaaacccccacaacatcggggtgccattgccaataattt 52470118  T
Q  334 gaaacaccaagctgcaatatgacattagaaagtaagatcctacactccactactatctcctcctcccacgcccacaacctcatcct 419  Q
    ||||||||||||| ||| || |||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||| ||||    
T  52470117 gaaacaccaagctacaaaataacattagaaagtaaaatcctacactccactaccttctcctcctcccacgcccacaacctcctcct 52470032  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 25504890 - 25504834
Alignment:
Q  372 cctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    ||||||||||||||  ||||||||||||||||||||||| |||  ||| ||||||||    
T  25504890 cctacactccactaacatctcctcctcccacgcccacaatctccgcctccactgcca 25504834  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 20987416 - 20987464
Alignment:
Q  371 tcctacactccactactatctcctcctcccacgcccacaacctcatcct 419  Q
    ||||||||||||| || | ||||||||||||||||||||| ||| ||||    
T  20987416 tcctacactccaccaccaactcctcctcccacgcccacaatctcctcct 20987464  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 432
Target Start/End: Original strand, 9509893 - 9510057
Alignment:
Q  268 agcacctgatatctcgagcgcaccgagtaaccccccacaacatcggggtgccaccgctagtaaactgaaacaccaagctgcaatatgacattagaaagta 367  Q
    |||| ||||||||  || |||||||| |||||||||||||  |||||||||||  || ||| | ||||||||| |  | ||||  | ||||||| |||||    
T  9509893 agcaactgatatcctgaacgcaccgaataaccccccacaatgtcggggtgccattgcaagtgatctgaaacactagacagcaaagtaacattagcaagta 9509992  T
Q  368 agatcctacactccactactatctcctcctcccacgcccacaacctcatcctacactgccatgcc 432  Q
    |||||||||||||| |||| | |||||||||||| |||||||||||| |||| | || |||||||    
T  9509993 agatcctacactccgctaccaactcctcctcccatgcccacaacctcctcctcccctaccatgcc 9510057  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 432
Target Start/End: Original strand, 9517868 - 9518032
Alignment:
Q  268 agcacctgatatctcgagcgcaccgagtaaccccccacaacatcggggtgccaccgctagtaaactgaaacaccaagctgcaatatgacattagaaagta 367  Q
    |||| ||||||||  || |||||||| |||||||||||||  |||||||||||  || ||| | ||||||||| |  | ||||  | ||||||| |||||    
T  9517868 agcaactgatatcctgaacgcaccgaataaccccccacaatgtcggggtgccattgcaagtgatctgaaacactagacagcaaagtaacattagcaagta 9517967  T
Q  368 agatcctacactccactactatctcctcctcccacgcccacaacctcatcctacactgccatgcc 432  Q
    |||||||||||||| |||| | |||||||||||| |||||||||||| |||| | || |||||||    
T  9517968 agatcctacactccgctaccaactcctcctcccatgcccacaacctcctcctcccctaccatgcc 9518032  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 424
Target Start/End: Original strand, 17620266 - 17620345
Alignment:
Q  345 ctgcaatatgacattagaaagtaagatcctacactccactactatctcctcctcccacgcccacaacctcatcctacact 424  Q
    ||||||||||||||||| |||||| | |||||||||  |||| | ||||| ||||||||||||||||||| |||| ||||    
T  17620266 ctgcaatatgacattagcaagtaacaacctacactctgctaccaactccttctcccacgcccacaacctcctcctccact 17620345  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 413
Target Start/End: Original strand, 28308710 - 28308760
Alignment:
Q  363 aagtaagatcctacactccactactatctcctcctcccacgcccacaacct 413  Q
    |||||| || ||||||||| |||  ||||||||||||||||||||||||||    
T  28308710 aagtaaaattctacactcccctaagatctcctcctcccacgcccacaacct 28308760  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 428
Target Start/End: Original strand, 11338973 - 11339046
Alignment:
Q  355 acattagaaagtaagatcctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    |||||||||||||| | |||||||||| |||| || ||||||||||||||||||||||||  ||| ||||||||    
T  11338973 acattagaaagtaacaacctacactcctctaccatttcctcctcccacgcccacaacctccgcctccactgcca 11339046  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 428
Target Start/End: Complemental strand, 23054950 - 23054805
Alignment:
Q  283 gagcgcaccgagtaaccccccacaacatcggggtgccaccgctagtaaactgaaacaccaagctgcaatatgacattagaaagtaagatcctacactcca 382  Q
    |||||||||||||| |||||||||||||| ||  ||||| || ||| | | |||| | ||| |||||  || |  ||||||||||| ||||||||||||     
T  23054950 gagcgcaccgagtagccccccacaacatcaggaagccactgccagtgatccgaaatatcaacctgcataataaagttagaaagtaatatcctacactccg 23054851  T
Q  383 ctactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    |||  ||||  ||||||||| ||||||||||| |||| ||||||||    
T  23054850 ctaacatcttttcctcccacacccacaacctcctcctccactgcca 23054805  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 28173890 - 28173821
Alignment:
Q  355 acattagaaagtaagatcctacactccactactatctcctcctcccacgcccacaacctcatcctacact 424  Q
    ||||||| |||||| | |||||||||| |||| | ||||||||||||||||||||| ||| |||| ||||    
T  28173890 acattagcaagtaacaacctacactccgctaccaactcctcctcccacgcccacaatctcctcctccact 28173821  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 428
Target Start/End: Original strand, 47923849 - 47923994
Alignment:
Q  283 gagcgcaccgagtaaccccccacaacatcggggtgccaccgctagtaaactgaaacaccaagctgcaatatgacattagaaagtaagatcctacactcca 382  Q
    |||||||||||||| |||||||||||||| ||  ||||  || |   | |||||||| | | |||||| |  || |||||||||||  || ||||||||     
T  47923849 gagcgcaccgagtagccccccacaacatcaggaagccattgccaacgatctgaaacatctacctgcaaaacaacgttagaaagtaacgtcatacactcct 47923948  T
Q  383 ctactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    |||  ||||| ||||||||| ||||||||||| |||| ||||||||    
T  47923949 ctaacatctcttcctcccacacccacaacctcctcctccactgcca 47923994  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 45992819 - 45992875
Alignment:
Q  372 cctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    ||||||||||||||  ||||||||||||||||||||||| |||  ||| ||||||||    
T  45992819 cctacactccactaacatctcctcctcccacgcccacaatctccgcctccactgcca 45992875  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 8723029 - 8722982
Alignment:
Q  363 aagtaagatcctacactccactactatctcctcctcccacgcccacaa 410  Q
    |||||| |||||||||||| |||| ||||||||||| |||||||||||    
T  8723029 aagtaaaatcctacactcctctaccatctcctcctctcacgcccacaa 8722982  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 409
Target Start/End: Complemental strand, 8753294 - 8753248
Alignment:
Q  363 aagtaagatcctacactccactactatctcctcctcccacgcccaca 409  Q
    |||||||| ||||||||||||||| || |||||||| ||||||||||    
T  8753294 aagtaagagcctacactccactaccatgtcctcctcacacgcccaca 8753248  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 428
Target Start/End: Original strand, 25924308 - 25924369
Alignment:
Q  367 aagatcctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    |||| ||||||||||||||  | ||||||||||||||||||||| |||  ||| ||||||||    
T  25924308 aagaccctacactccactaacaactcctcctcccacgcccacaaactccgcctccactgcca 25924369  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 20349206 - 20349254
Alignment:
Q  371 tcctacactccactactatctcctcctcccacgcccacaacctcatcct 419  Q
    ||||||||| ||| |||| ||||||||||||||||||||| ||| ||||    
T  20349206 tcctacacttcaccactaactcctcctcccacgcccacaatctcctcct 20349254  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 27544511 - 27544475
Alignment:
Q  371 tcctacactccactactatctcctcctcccacgccca 407  Q
    |||||||||||||||| || |||||||||||||||||    
T  27544511 tcctacactccactaccatttcctcctcccacgccca 27544475  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 428
Target Start/End: Original strand, 23923065 - 23923148
Alignment:
Q  345 ctgcaatatgacattagaaagtaagatcctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    |||||| || || ||||||||||| | |||||||||| |||  ||||||||||||||| ||||||||||| |||| ||||||||    
T  23923065 ctgcaaaataacgttagaaagtaacaacctacactccgctaacatctcctcctcccacacccacaacctcctcctccactgcca 23923148  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 419
Target Start/End: Original strand, 34338130 - 34338173
Alignment:
Q  376 cactccactactatctcctcctcccacgcccacaacctcatcct 419  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||||    
T  34338130 cactccactaccatctcctcctcccacacccacaacctcctcct 34338173  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 11574591 - 11574535
Alignment:
Q  372 cctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    |||||||||| |||  ||||||||||||||||||||||| |||  ||| ||||||||    
T  11574591 cctacactcctctaacatctcctcctcccacgcccacaatctccgcctccactgcca 11574535  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 428
Target Start/End: Original strand, 18489011 - 18489107
Alignment:
Q  332 ctgaaacaccaagctgcaatatgacattagaaagtaagatcctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    ||||||||  || |||||| || ||||||| | |||| | |||||||||| ||||||  ||||||||||||||||||||||||  ||| ||||||||    
T  18489011 ctgaaacattaatctgcaaaataacattagcaggtaacaacctacactcctctactaattcctcctcccacgcccacaacctccgcctccactgcca 18489107  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 4987962 - 4987906
Alignment:
Q  372 cctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    ||||||||||||||  ||||||||||||||||||||||| |||  ||| ||||||||    
T  4987962 cctacactccactaacatctcctcctcccacgcccacaatctctgcctccactgcca 4987906  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 26979960 - 26979879
Alignment:
Q  163 ctgtcctgaagcagacgccaagctaaaatagacacttttaacggcacctgagagtgacacatgggtttctctgaagcatcca 244  Q
    ||||||||||||| |||||| ||||||||| |||| || |||| ||||||||  || || ||| ||||||||| | ||||||    
T  26979960 ctgtcctgaagcaaacgccacgctaaaataaacaccttcaacgacacctgagtatgccaaatgagtttctctgcaccatcca 26979879  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 19647952 - 19648008
Alignment:
Q  372 cctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    ||||||||||||||  ||||||||||||||||||||||| |||  ||| ||||||||    
T  19647952 cctacactccactaacatctcctcctcccacgcccacaatctccgcctccactgcca 19648008  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 28713234 - 28713163
Alignment:
Q  353 tgacattagaaagtaagatcctacactccactactatctcctcctcccacgcccacaacctcatcctacact 424  Q
    ||||||||| |||||| | |||||||||  |||| | |||||||||||||||||||| |||| |||| ||||    
T  28713234 tgacattagcaagtaacaacctacactctgctaccaactcctcctcccacgcccacagcctcctcctccact 28713163  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 432
Target Start/End: Complemental strand, 29553638 - 29553577
Alignment:
Q  371 tcctacactccactactatctcctcctcccacgcccacaacctcatcctacactgccatgcc 432  Q
    ||||||||||| |||  | ||||||||||||||||||||| |||  ||| ||||||||||||    
T  29553638 tcctacactcctctaacaactcctcctcccacgcccacaatctccgcctccactgccatgcc 29553577  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 412
Target Start/End: Original strand, 46543213 - 46543262
Alignment:
Q  363 aagtaagatcctacactccactactatctcctcctcccacgcccacaacc 412  Q
    |||||| | |||||||||  |||| |||||||||||||||||||||||||    
T  46543213 aagtaaaagcctacactcttctaccatctcctcctcccacgcccacaacc 46543262  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 428
Target Start/End: Original strand, 19114679 - 19114735
Alignment:
Q  372 cctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    |||||||||| ||| |||||||||||||||| ||||||| |||  ||| ||||||||    
T  19114679 cctacactcctctaatatctcctcctcccacacccacaatctccgcctccactgcca 19114735  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 428
Target Start/End: Complemental strand, 49926163 - 49926107
Alignment:
Q  372 cctacactccactactatctcctcctcccacgcccacaacctcatcctacactgcca 428  Q
    ||||||||||||||  | ||||||||||||||||||||| |||  ||| ||||||||    
T  49926163 cctacactccactaacaactcctcctcccacgcccacaatctccgcctccactgcca 49926107  T

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