View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0961_low_15 (Length: 408)
Name: NF0961_low_15
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 94 - 392
Target Start/End: Original strand, 52750697 - 52750993
Alignment:
| Q |
94 |
catggtgctcaagtagcaa-catcgatacaatctttcttcttgacaagaaaaaagttatgcttcccagtcactcctcatctgaataattaaacttaactg |
192 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
52750697 |
catggtgctcaagtagcaaacatcgatacaatctttct---tgacaagaaaaaagttatgcttctcagtcactcctcatctgaataattaaacttaactg |
52750793 |
T |
|
| Q |
193 |
agtgggaatgtaaatcaataagtccacccctataggtcccacgtttcttcttggtcttttcgtggcgaaaatccctgcaagagaaatatttggtgtaacc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52750794 |
agtgggaatgtaaatcaataagtccacccctataggtcccacgtttcttcttggtcttttcgtggcgaaaatccctgcaagagaaatatttggtgtaacc |
52750893 |
T |
|
| Q |
293 |
aaaaaagcaaaataagatggtaataaaagtgtatttgaagaaattacacacattacaaaacaattatattggttagctgaataagaaattaaaaaggttt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52750894 |
aaaaaagcaaaataagatggtaataaaagtgtatttgaagaaattacacacattataaaacaattatattggttagctgaataagaaattaaaaaggttt |
52750993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University