View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_low_2 (Length: 665)
Name: NF0961_low_2
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 43 - 636
Target Start/End: Original strand, 47876038 - 47876621
Alignment:
| Q |
43 |
gagcagagaggggggtaacttgagaaaactagaaagtgaccgttcatatcgccatgcttaccgccaaaaggaagtggctaacagattgggggagatgtta |
142 |
Q |
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| T |
47876038 |
gagcggagaggggggtaacttgagaaaactagaaagtgaccgttcatatcgctatgcttaccgccaaaaggaagtggctaacagattgggggagatgtta |
47876137 |
T |
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| Q |
143 |
tacgagggattaattacgcatagcactggttccttctcgagcccagttattcttataaaaaagcatgatggaccttagcttgaggattataggacactaa |
242 |
Q |
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| T |
47876138 |
tacgagggattaattacgcatagcactggtcccttctcgagcccagttattcttataaaaaagaatgatggacctt-----gaggattataggacactaa |
47876232 |
T |
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| Q |
243 |
ataaggcgatggtgcatatcctcttactatggttaaatgacttgctcaatgaactggatggtttcagtaaaaataaggatttggttctgaatagcttggg |
342 |
Q |
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| T |
47876233 |
ataaggcgatggtgcatatcctcttactatggttaaatgacttgctcaatgaactggatggtttcagtaaaaataaggatttggttctgaatagcttggg |
47876332 |
T |
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| Q |
343 |
agattagctctgagcattctgtacgatgataaaaatatacaaagggaatcc-tttgacaaaagggactaaactgtcctatatcaatctaattacatcata |
441 |
Q |
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| T |
47876333 |
agattaactctgagcattttgtacgatgataaaaatatacaaagggaatccttttgacacaagggactaaactgtcctatatcaatctaattacatcaga |
47876432 |
T |
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| Q |
442 |
gactcgatt-aaagtatatatctcattcagagttatatacatagatataacaaatatttacgtagaggaaataagggagagaaataacaaatattctaca |
540 |
Q |
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| T |
47876433 |
gacttgattaaaagtgtatatctcattcagagttatatacatagaaataacaaatatttatgtagaggaaataagggagagaaataacaaatattcttca |
47876532 |
T |
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| Q |
541 |
ccattatctcaattctcaacaattcccattacttttccaagaatattgacctcaaatctaggttccctcaaactagagttaaggaagagtactttc |
636 |
Q |
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| T |
47876533 |
ccatta-------tctcaacaattcccattacttttccaagaatattgacctcaaatctaggttccctcaaactagagttaaggaagagtactttc |
47876621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25356787 - 25356743
Alignment:
| Q |
1 |
ccaattgtgattaacgatgatgaatatgatgatgatgaggaggag |
45 |
Q |
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| T |
25356787 |
ccaattttgattaacgatgatgaatatgatgatgatgatgaggag |
25356743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25349580 - 25349543
Alignment:
| Q |
1 |
ccaattgtgattaacgatgatgaatatgatgatgatga |
38 |
Q |
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| T |
25349580 |
ccaattgtgattaacgatgatgattatgatgatgatga |
25349543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25352118 - 25352084
Alignment:
| Q |
1 |
ccaattgtgattaacgatgatgaatatgatgatga |
35 |
Q |
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| T |
25352118 |
ccaattgtgattaacgatgatgattatgatgatga |
25352084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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