View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_low_21 (Length: 373)
Name: NF0961_low_21
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 28 - 371
Target Start/End: Original strand, 38467905 - 38468248
Alignment:
| Q |
28 |
caattccttggttttccttacataatggtcggttcatgtattgggtcttcgggatgaactcctggactagattttgatccatatcattctcctttatttg |
127 |
Q |
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| T |
38467905 |
caattccttggttttccttacataatggtcggttcatgtattgggtcttcgggatgaactcctggactagattttgatccatatcattctcctttatttg |
38468004 |
T |
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| Q |
128 |
attaggactcatcctcaaatcaagttatgattcattgtcaaagtacggtaaaagatcgacagcattgtagaatgtactactgactttataggtgcttaaa |
227 |
Q |
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| T |
38468005 |
attaggactcatcctcaaatcaagttatgattcattgtcaaagtacagtaaaagatcgacagcattgtagaatgtactactgactttataggtgcttaaa |
38468104 |
T |
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| Q |
228 |
attttaccatgtaagcaagttcattgatcttatgcacaactttgaacaaaccatcatctgttgaggaaatcttggcatttagttgatttaaaaattgttc |
327 |
Q |
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| T |
38468105 |
attttaccatgtaagcaagttcattgatcttatgcacaactttgaacaaaccatcatctgttgaggaaatcttggcatttagttgatttaaaaattgttc |
38468204 |
T |
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| Q |
328 |
ctttcatgtgtctcctttaaaagtgtgcaacctacaatgttttt |
371 |
Q |
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| T |
38468205 |
ctttcgtgtgtctcctttaaaagtgtgcaacctacaatgttttt |
38468248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 82 - 332
Target Start/End: Original strand, 38468584 - 38468828
Alignment:
| Q |
82 |
tgaactcctggactagat-tttgatccatatcattctcctttatttgattaggactcatcctcaaatcaagttatgattcattgtcaaagtacggtaaaa |
180 |
Q |
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| T |
38468584 |
tgaactcctggacttgatctttgatccatatcattctgccttactcgattaggactcaacctcaagtcaagctatgcttcattgtcaaagtatggtaaac |
38468683 |
T |
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| Q |
181 |
gatcgacagcattgtagaatgtactactgactttataggtgcttaaaattttaccatgtaagcaagttcattgatcttatgcacaactttgaacaaacca |
280 |
Q |
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| T |
38468684 |
aatcgacaacactgaaggttgtagca---actttataggtgcttaaagttttaccttgtaaatatgtcc----gtcttatgcacaactctgaacaaacca |
38468776 |
T |
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| Q |
281 |
tcatctgttgaggaaatcttggcatttagttgatttaaaaattgttcctttc |
332 |
Q |
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| T |
38468777 |
tcatctgttaaggaatcattggcatttggttgattaaaaaattgttcttttc |
38468828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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