View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_low_25 (Length: 326)
Name: NF0961_low_25
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_low_25 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0439 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 46 - 326
Target Start/End: Original strand, 20039332 - 20039612
Alignment:
| Q |
46 |
caattaaaacttgtgttacacacaattccatatattgtttttcagcgctaatcagcggaacctagccaaatctgaaacagtgaagtcaatcaaaattctt |
145 |
Q |
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| T |
20039332 |
caattaaaacttgtgttacacacaattccatatattgtttttcagcgctgatcagcggaacctagccaaatctgaaacagtgaagtcaatcaaaattctt |
20039431 |
T |
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| Q |
146 |
tctacaacgatgatctccccgggtgtagtcgtaagagacgcaacacctgttgacctatttaagattcttgtggatgctgttttacctgacgtggatactc |
245 |
Q |
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| T |
20039432 |
tctacaacgatgatctccccgggtgtagtcgtaagagacgcaacacctgttgacctatttaagattcttgtggatgctgttttacctgacgtggatactc |
20039531 |
T |
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| Q |
246 |
aaagtttggtgaatggtaagcttcttcaagttgccacggatgatctcctaggcattatcttcggttacatcgtctttgatg |
326 |
Q |
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| T |
20039532 |
aaagtttggtgaatggtaagcttcttcaagttgccacggatgatctcctaggcattatcttcggttacatcgtctttgatg |
20039612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0439 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0439
Description:
Target: scaffold0439; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 325
Target Start/End: Complemental strand, 5504 - 5352
Alignment:
| Q |
173 |
gtcgtaagagacgcaacacctgttgacctatttaagattcttgtggatgctgttttacctgacgtggatactcaaagtttggtgaatggtaagcttcttc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||| ||| | ||| ||||| |||||||||| |||||| |
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| T |
5504 |
gtcgtaagagacgcaacacctgttgacctatttaagattcttatggatgctattttccctaacgtcgatgttaaaactttggcgaatggtaagattcttc |
5405 |
T |
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| Q |
273 |
aagttgccacggatgatctcctaggcattatcttcggttacatcgtctttgat |
325 |
Q |
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|||| ||| |||| | ||||||||| ||||| |||||| ||| ||||||||| |
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| T |
5404 |
aagtcgccgaggataagctcctaggcgttatcctcggtttcattgtctttgat |
5352 |
T |
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