View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_low_28 (Length: 323)
Name: NF0961_low_28
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 32 - 248
Target Start/End: Complemental strand, 34029778 - 34029562
Alignment:
| Q |
32 |
ttaaaagaccaacttggtgtttgcaggtggaactatgcttttaggtcaattcatcaacatgctaagaacaatattagatcatacactcaggctaagaaat |
131 |
Q |
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| T |
34029778 |
ttaaaagaccaacttggtgtatgcaggtggaactatgcttttaggtcacttcatcaacatgctaagaacaatattagatcatacactcaggctaagaaat |
34029679 |
T |
|
| Q |
132 |
tgtcatctgcttcttctgctgctgtttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagtcatggacttgaattgttggggtcctagtac |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34029678 |
tgtcatctgcttcttctgctgctgtttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagtcatggacttgaattgttggggtcctagtac |
34029579 |
T |
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| Q |
232 |
tgcaaggttttaatatt |
248 |
Q |
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||||||||||||||||| |
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| T |
34029578 |
tgcaaggttttaatatt |
34029562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 31 - 248
Target Start/End: Complemental strand, 34031714 - 34031497
Alignment:
| Q |
31 |
attaaaagaccaacttggtgtttgcaggtggaactatgcttttaggtcaattcatcaacatgctaagaacaatattagatcatacactcaggctaagaaa |
130 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| || |||||| |
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| T |
34031714 |
attaaaagaccaacttggtgtatgcaggtggaactatgcttttagatcacttcatcaacatgctaagaacaatattagatcatactctcaagccaagaaa |
34031615 |
T |
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| Q |
131 |
ttgtcatctgcttcttctgctgctgtttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagtcatggacttgaattgttggggtcctagta |
230 |
Q |
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||||| |||||||| |||||||||||||| || |||||||| |||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |
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| T |
34031614 |
ttgtcctctgcttcatctgctgctgtttcgaataaggtgaagagaagcaaggaagaatctatgaggaaagtcattgacttgaattgctggggtcctagta |
34031515 |
T |
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| Q |
231 |
ctgcaaggttttaatatt |
248 |
Q |
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|||||||||||||||||| |
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| T |
34031514 |
ctgcaaggttttaatatt |
34031497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 32 - 248
Target Start/End: Complemental strand, 34026850 - 34026634
Alignment:
| Q |
32 |
ttaaaagaccaacttggtgtttgcaggtggaactatgcttttaggtcaattcatcaacatgctaagaacaatattagatcatacactcaggctaagaaat |
131 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || ||||||| || ||||||| |||||||||| |||||| |||||||||||| |||| ||||||| |
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| T |
34026850 |
ttaaaagaccaacttggtgtatgcaggtggaaccattcttttagatcctttcatcagcatgctaagagcaatatcagatcatacactaaggccaagaaat |
34026751 |
T |
|
| Q |
132 |
tgtcatctgcttcttctgctgctgtttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagtcatggacttgaattgttggggtcctagtac |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| |
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| T |
34026750 |
tgtcatctgcttcttctgctgctgtttccaacaaggtgaagagaagcaaggaagaatctatgaggaaagtcattgacttgaattgtcggggtcctagtac |
34026651 |
T |
|
| Q |
232 |
tgcaaggttttaatatt |
248 |
Q |
| |
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| ||||||||||||||| |
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| T |
34026650 |
ttcaaggttttaatatt |
34026634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 34034743 - 34034675
Alignment:
| Q |
157 |
ttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagtcatggacttgaattgttggggtcc |
225 |
Q |
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||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34034743 |
ttccaacaaggggaagagaaacaaggaagaatctatgaagaaagtcatggacctgaattgttggggtcc |
34034675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 38019382 - 38019427
Alignment:
| Q |
182 |
gaagaatctatgaagaaagtcatggacttgaattgttggggtccta |
227 |
Q |
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||||||||| ||| |||||||||| |||||| |||||||||||||| |
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| T |
38019382 |
gaagaatctttgaggaaagtcatgtacttgagttgttggggtccta |
38019427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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