View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0961_low_3 (Length: 544)
Name: NF0961_low_3
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 235 - 395
Target Start/End: Original strand, 28737385 - 28737545
Alignment:
| Q |
235 |
gacaattgattattttgttatgtaaatcgtaaccaaaaagccaaatgcaaaagcgcttcccagaaccaaaggcagaaaccaaacgcagaaacgcatcact |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
28737385 |
gacaattgattattttgttatgtaaatcgtaaccaaaaagccaaatgcaaaagtgcttcccaaaaccaaaggcagaagccaaacgtagaaatgcatcact |
28737484 |
T |
|
| Q |
335 |
tccaatcctcaatttcttgtcgccgttccttaccctttccccttcttcatcgccgtctctg |
395 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28737485 |
tccagtcctcaatttcttgtcgccgttccttaccctttccccttcttcatcgccgtctctg |
28737545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 478 - 540
Target Start/End: Original strand, 36277137 - 36277199
Alignment:
| Q |
478 |
agcacttacaatcacttttagtttatggtgttaatcaattgcaacgtcttctcgcatctgttt |
540 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||| |||||| |
|
|
| T |
36277137 |
agcacgtacaatcacttttagtttatggttttaatcaatttcaacgtcttctggcagctgttt |
36277199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University