View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_low_33 (Length: 271)
Name: NF0961_low_33
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 52751022 - 52751279
Alignment:
| Q |
1 |
aatctaggaaaagttgaactagcttcagcattgtcattcaacaaacaggttttccatcgaaaactcgctagacaaatcaaaacttcatgcaaccaacaga |
100 |
Q |
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| T |
52751022 |
aatctagaaaaagttgaactagcttcagcattgtcattcaacaaacgggttttccatcgaaaactcgctagacaaatcaaaacttcatgcaaccaacaga |
52751121 |
T |
|
| Q |
101 |
gtgacctatttatagcttgtctatgaaaacataaatcttgcaatgctaaatacactaaacaaataatcaataatgacattttttatgcatgcatttaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52751122 |
gtgacctatttatagcttgtctatgaaaacataaatcttgcaatgctaaatacactaaacaaataatcaataatgacattttttatgcatgcatttaata |
52751221 |
T |
|
| Q |
201 |
caactgcaaatattggaaataaaattgtttcactacagatatgaaataacagaccttc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52751222 |
caactgcaaatattggaaataaaattgtttcactacggatatgaaataacagaccttc |
52751279 |
T |
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