View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_low_35 (Length: 264)
Name: NF0961_low_35
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 48668680 - 48668799
Alignment:
| Q |
29 |
aaaaagaaggtagctaaagtgtaacaattgaaggccagctggtagctgattagatatgacatattcattgttcacacaagatagaagaaggcacaacatg |
128 |
Q |
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| T |
48668680 |
aaaaagaaggtagctaaagtgtaacaattgaaggccagctggtagctgattagatatgacatattcattgttcacacaagatagaagaaggcacaacatg |
48668779 |
T |
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| Q |
129 |
gatcgatataaatgtccaaa |
148 |
Q |
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|||||||||||||||||||| |
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| T |
48668780 |
gatcgatataaatgtccaaa |
48668799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 143 - 263
Target Start/End: Complemental strand, 33828071 - 33827951
Alignment:
| Q |
143 |
tccaaaatcacgcattatcatcattacagtggaagctgttcatctgtcgcatatgatatcgaaaccgttttcccagaaagagtttcttactgtattgatt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828071 |
tccaaaatcacgcattatcatcattacagtggaagctgttcatctgtcgcatatgatatcgaaaccgttttcccagaaagagtttcttactgtattgatt |
33827972 |
T |
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| Q |
243 |
gtatggcctatgatactacac |
263 |
Q |
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||||||||||| ||||||||| |
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| T |
33827971 |
gtatggcctataatactacac |
33827951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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