View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_low_36 (Length: 252)
Name: NF0961_low_36
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 36513718 - 36513480
Alignment:
| Q |
1 |
tattttccctttttatttgatgctatgattgacacattgaatgagaataagcgtgtgaatcgtgaagttagtgaaagaaaatgtagaaattgtgaataaa |
100 |
Q |
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| T |
36513718 |
tattttccctttttatttgatgctatgattgacacattgaatgagaataagcgtgtgaatcgtgaagttagtgaaacaaaatgtaaaaattgtgaataaa |
36513619 |
T |
|
| Q |
101 |
aatataaatttatggtaaaacgcatttttcaattttgaagtgaagaagagcatgtagtatctcaagggaaagcgacctatatgattgtactgccttttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36513618 |
aatataaatttatggtaaaacgcatttttcaattttgaagtgaagaagagcatgtagtatctcaagggaaagtgacctatatgattgtactgccttttta |
36513519 |
T |
|
| Q |
201 |
ccgacagttagccgacccggttttctttgcttactcttc |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
36513518 |
ccgacagttagccgacccggttttctttgcttactcttc |
36513480 |
T |
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