View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_low_44 (Length: 230)
Name: NF0961_low_44
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 34029777 - 34029560
Alignment:
| Q |
1 |
taaaagaccaacttggtgtttgcgggtggaactatgcttttaggtcaattcatcaacatgctaagaacaatattagatcatacactcaggctaagaaatt |
100 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34029777 |
taaaagaccaacttggtgtatgcaggtggaactatgcttttaggtcacttcatcaacatgctaagaacaatattagatcatacactcaggctaagaaatt |
34029678 |
T |
|
| Q |
101 |
gtcatctgcttcttctgctgctgtttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagtcatggacttgaattgttggggtcctagtact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34029677 |
gtcatctgcttcttctgctgctgtttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagtcatggacttgaattgttggggtcctagtact |
34029578 |
T |
|
| Q |
201 |
gcaaggttttaatattgt |
218 |
Q |
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|||||||||||||||||| |
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| T |
34029577 |
gcaaggttttaatattgt |
34029560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 34031712 - 34031495
Alignment:
| Q |
1 |
taaaagaccaacttggtgtttgcgggtggaactatgcttttaggtcaattcatcaacatgctaagaacaatattagatcatacactcaggctaagaaatt |
100 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| || |||||||| |
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| T |
34031712 |
taaaagaccaacttggtgtatgcaggtggaactatgcttttagatcacttcatcaacatgctaagaacaatattagatcatactctcaagccaagaaatt |
34031613 |
T |
|
| Q |
101 |
gtcatctgcttcttctgctgctgtttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagtcatggacttgaattgttggggtcctagtact |
200 |
Q |
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||| |||||||| |||||||||||||| || |||||||| |||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |
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| T |
34031612 |
gtcctctgcttcatctgctgctgtttcgaataaggtgaagagaagcaaggaagaatctatgaggaaagtcattgacttgaattgctggggtcctagtact |
34031513 |
T |
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| Q |
201 |
gcaaggttttaatattgt |
218 |
Q |
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|||||||||||||||||| |
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| T |
34031512 |
gcaaggttttaatattgt |
34031495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 34026849 - 34026632
Alignment:
| Q |
1 |
taaaagaccaacttggtgtttgcgggtggaactatgcttttaggtcaattcatcaacatgctaagaacaatattagatcatacactcaggctaagaaatt |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| || ||||||| || ||||||| |||||||||| |||||| |||||||||||| |||| |||||||| |
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| T |
34026849 |
taaaagaccaacttggtgtatgcaggtggaaccattcttttagatcctttcatcagcatgctaagagcaatatcagatcatacactaaggccaagaaatt |
34026750 |
T |
|
| Q |
101 |
gtcatctgcttcttctgctgctgtttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagtcatggacttgaattgttggggtcctagtact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |
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| T |
34026749 |
gtcatctgcttcttctgctgctgtttccaacaaggtgaagagaagcaaggaagaatctatgaggaaagtcattgacttgaattgtcggggtcctagtact |
34026650 |
T |
|
| Q |
201 |
gcaaggttttaatattgt |
218 |
Q |
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||||||||||||||||| |
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| T |
34026649 |
tcaaggttttaatattgt |
34026632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 34034743 - 34034675
Alignment:
| Q |
125 |
ttccaacaaggtgaaaagaaccaaggaagaatctatgaagaaagtcatggacttgaattgttggggtcc |
193 |
Q |
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||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34034743 |
ttccaacaaggggaagagaaacaaggaagaatctatgaagaaagtcatggacctgaattgttggggtcc |
34034675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 38019382 - 38019427
Alignment:
| Q |
150 |
gaagaatctatgaagaaagtcatggacttgaattgttggggtccta |
195 |
Q |
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||||||||| ||| |||||||||| |||||| |||||||||||||| |
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| T |
38019382 |
gaagaatctttgaggaaagtcatgtacttgagttgttggggtccta |
38019427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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