View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0961_low_48 (Length: 218)
Name: NF0961_low_48
Description: NF0961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0961_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 20767223 - 20767094
Alignment:
| Q |
5 |
attgtttcatcttcaatccatcatcaatcatattttccatttcttcttcacattgatttcatattcgttcgaaatggtgaataatttaatctgctttaac |
104 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20767223 |
attgtttcatcttcaatccatcttcaatcatattttccatttcttcttcacataaatttcatattcgttcgaaatggtgaatgatttaatctgctttaac |
20767124 |
T |
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| Q |
105 |
tattcagatatgttgttcgcgttttttcat |
134 |
Q |
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| T |
20767123 |
ttttcagatatgttgttcgcgttttttcat |
20767094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 8303802 - 8303927
Alignment:
| Q |
5 |
attgtttcatcttcaatccatcatcaatcatattttccatttcttcttcacattgatttcatattcgttcgaaatggtgaataatttaatctgctttaac |
104 |
Q |
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||||||||||||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||| |
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| T |
8303802 |
attgtttcatcttcaatccattatccatcatcttttccgtttcttcttcacattgatttcatatttattcaaaatggtgaatattgtaatctgctttaac |
8303901 |
T |
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| Q |
105 |
tattcagatatgttgttcgcgttttt |
130 |
Q |
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| |||| |||||||||||| |||||| |
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| T |
8303902 |
ttttcatatatgttgttcgtgttttt |
8303927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 32869419 - 32869483
Alignment:
| Q |
5 |
attgtttcatcttcaatccatcatcaatcatattttccatttcttcttcacattgatttcatatt |
69 |
Q |
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||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||| |
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| T |
32869419 |
attgtttcatcttcaatccatcatccatcatcttttccaattcttcttcacattgattgcatatt |
32869483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 19257341 - 19257291
Alignment:
| Q |
5 |
attgtttcatcttcaatccatcatcaatcatattttccatttcttcttcac |
55 |
Q |
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|||||||| |||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
19257341 |
attgtttcctcttcaatccatcatccatcatcttttccatttcttcttcac |
19257291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 8409573 - 8409617
Alignment:
| Q |
9 |
tttcatcttcaatccatcatcaatcatattttccatttcttcttc |
53 |
Q |
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||||||||||||||| |||| ||||| ||||||||||||||||| |
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| T |
8409573 |
tttcatcttcaatccttcattgatcatcttttccatttcttcttc |
8409617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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