View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0962_high_17 (Length: 457)

Name: NF0962_high_17
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0962_high_17
NF0962_high_17
[»] chr2 (9 HSPs)
chr2 (149-430)||(8717496-8717757)
chr2 (8-164)||(8717777-8717933)
chr2 (317-382)||(8996792-8996857)
chr2 (307-377)||(39792136-39792206)
chr2 (298-377)||(20555282-20555361)
chr2 (316-382)||(25903726-25903792)
chr2 (307-382)||(41205523-41205598)
chr2 (309-382)||(45065615-45065688)
chr2 (309-377)||(9152424-9152492)
[»] chr5 (11 HSPs)
chr5 (299-382)||(5240247-5240330)
chr5 (310-421)||(29486530-29486640)
chr5 (309-380)||(42364258-42364329)
chr5 (309-382)||(21032563-21032636)
chr5 (309-380)||(21032570-21032641)
chr5 (295-382)||(892587-892673)
chr5 (308-382)||(5240262-5240336)
chr5 (299-369)||(7604209-7604279)
chr5 (309-382)||(42364251-42364324)
chr5 (321-377)||(5004005-5004061)
chr5 (307-339)||(8567955-8567987)
[»] chr4 (18 HSPs)
chr4 (297-418)||(15794764-15794885)
chr4 (309-382)||(22720542-22720615)
chr4 (309-382)||(22768180-22768253)
chr4 (307-382)||(41622126-41622201)
chr4 (309-382)||(22720537-22720610)
chr4 (299-371)||(30403970-30404042)
chr4 (299-382)||(52673634-52673717)
chr4 (309-382)||(2411875-2411948)
chr4 (304-372)||(5924525-5924593)
chr4 (310-382)||(22768176-22768248)
chr4 (314-370)||(30990628-30990684)
chr4 (309-382)||(49083072-49083141)
chr4 (310-369)||(15794796-15794855)
chr4 (299-377)||(52760264-52760342)
chr4 (309-382)||(41622133-41622206)
chr4 (344-372)||(5418710-5418738)
chr4 (308-372)||(42299290-42299354)
chr4 (299-347)||(44626183-44626231)
[»] chr6 (14 HSPs)
chr6 (299-382)||(29938637-29938719)
chr6 (339-380)||(14093119-14093160)
chr6 (316-380)||(3989548-3989612)
chr6 (299-379)||(7632809-7632889)
chr6 (308-370)||(3257740-3257802)
chr6 (309-382)||(26388227-26388300)
chr6 (305-381)||(8051005-8051081)
chr6 (309-380)||(33123049-33123120)
chr6 (295-377)||(8030356-8030437)
chr6 (309-382)||(1158285-1158358)
chr6 (309-382)||(14589579-14589652)
chr6 (309-382)||(29938652-29938724)
chr6 (309-342)||(33123042-33123075)
chr6 (309-377)||(20890157-20890225)
[»] chr7 (5 HSPs)
chr7 (299-408)||(4132397-4132506)
chr7 (295-382)||(4132404-4132491)
chr7 (299-382)||(41115586-41115669)
chr7 (309-382)||(7107670-7107743)
chr7 (299-364)||(21387630-21387695)
[»] chr3 (13 HSPs)
chr3 (311-382)||(48748541-48748612)
chr3 (309-382)||(35239684-35239757)
chr3 (316-372)||(32186935-32186991)
chr3 (310-382)||(35239689-35239761)
chr3 (308-367)||(26389443-26389502)
chr3 (298-381)||(42225586-42225669)
chr3 (299-380)||(53711899-53711979)
chr3 (299-382)||(29497381-29497464)
chr3 (307-382)||(50334957-50335032)
chr3 (344-382)||(30082257-30082295)
chr3 (299-381)||(32186910-32186992)
chr3 (309-382)||(22003836-22003909)
chr3 (309-382)||(22011353-22011426)
[»] chr1 (11 HSPs)
chr1 (299-382)||(43731155-43731238)
chr1 (308-382)||(897047-897121)
chr1 (299-371)||(14773744-14773816)
chr1 (307-382)||(8352164-8352239)
chr1 (299-380)||(31635783-31635864)
chr1 (308-365)||(39969796-39969854)
chr1 (299-377)||(50105681-50105759)
chr1 (308-382)||(51612947-51613021)
chr1 (298-347)||(6793618-6793667)
chr1 (299-340)||(26468315-26468356)
chr1 (307-375)||(1599060-1599128)
[»] chr8 (15 HSPs)
chr8 (308-382)||(325248-325322)
chr8 (299-377)||(27939032-27939110)
chr8 (309-382)||(6197862-6197935)
chr8 (299-372)||(28205819-28205892)
chr8 (308-382)||(33837620-33837694)
chr8 (309-382)||(6197857-6197930)
chr8 (299-376)||(38779254-38779330)
chr8 (9-48)||(23442864-23442903)
chr8 (309-372)||(13325126-13325185)
chr8 (308-377)||(29358656-29358725)
chr8 (307-372)||(39199562-39199626)
chr8 (309-382)||(41915634-41915707)
chr8 (299-340)||(44577193-44577234)
chr8 (199-239)||(23443489-23443529)
chr8 (320-372)||(38764395-38764447)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 7e-84; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 149 - 430
Target Start/End: Complemental strand, 8717757 - 8717496
Alignment:
Q  149 acttattaaaagacgtgtagcccataattttaatgatttaggaagttttataagcatgttaattaggaaattttggtggtaatgaaaattcttattgcgt 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8717757 acttattaaaagacgtgtagcccataattttaatgatttaggaagttttataagcatgttaattagaaaattttggtggtaatgaaaattcttattgcgt 8717658  T
Q  249 atatattctctccgatcattattataagttaaatttcannnnnnnnagcaaaaatttaattttttaaatacattgaataaataatgtatctagtatataa 348  Q
    || ||||||||||||||| ||||||||||||||                     ||||||||||||||||||||||||||||||||||||||||||||||    
T  8717657 atgtattctctccgatcactattataagttaaa---------------------tttaattttttaaatacattgaataaataatgtatctagtatataa 8717579  T
Q  349 taaagactaaatacattaattatttaatgtatct-nnnnnnnttaaattttgcttataatagtgattggagagaatatatatg 430  Q
    ||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||| ||||| | ||||||||    
T  8717578 taaagactaaatacattaattatttaatgtatctaaaaaaaattaaattttacttataatagtgatcggagaaagtatatatg 8717496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 8717933 - 8717777
Alignment:
Q  8 ccaacaatatgagataatggtaccgttagatgtgttatcttattaaataagtgactcatttactcttttaataagttaactcttttacttggtcacattc 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8717933 ccaacaaaatgagataatggtaccgttagatgtgttatcttattaaataagtgactcatttactcttttaataagttaactcttttacttggtcacattc 8717834  T
Q  108 catgagcttaatacttacacgtctttcaatgagactaattcacttattaaaagacgt 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8717833 catgagcttaatacttacacgtctttcaatgagactaattcacttattaaaagacgt 8717777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 8996792 - 8996857
Alignment:
Q  317 tacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||| |||||||||    
T  8996792 tacattgaataattaatgtatctagtctataataaagactatatacattgattattcaatgtatct 8996857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 39792206 - 39792136
Alignment:
Q  307 attttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatg 377  Q
    |||||||| ||||| ||||||| ||||||||||| | ||||||||| |||| |||||||||||||||||||    
T  39792206 attttttagatacaatgaataattaatgtatctaatctataataaaaactagatacattaattatttaatg 39792136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 377
Target Start/End: Original strand, 20555282 - 20555361
Alignment:
Q  298 aaaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatg 377  Q
    ||||| ||||||||||| ||||||||||||| | |||||||| || || |||| |||| |||||||||| |||| |||||    
T  20555282 aaaaaattaattttttagatacattgaataattgatgtatcttgtctagaatatagaccaaatacattatttatgtaatg 20555361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 25903726 - 25903792
Alignment:
Q  316 atacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||||||||||| |||||||||| || || ||| |||| || |||||||||||||| |||||||||    
T  25903726 atacattgaataattaatgtatctcgtttacaatgaagagtagatacattaattattaaatgtatct 25903792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 41205523 - 41205598
Alignment:
Q  307 attttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||||| ||| ||||||||| | |||||||||||| | |||| | || |||||||| ||||||||||| |||||    
T  41205523 attttttagatatattgaataatttatgtatctagtaaaaaatataaaccaaatacataaattatttaatatatct 41205598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 45065615 - 45065688
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| |||||||||||||   ||||||||||| || |||  | | ||||||||| |||||||||||||||||    
T  45065615 tttttagatacattgaataatgtatgtatctagtctagaatctaaattaaatacataaattatttaatgtatct 45065688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 9152492 - 9152424
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatg 377  Q
    |||||| || |||||| ||| | ||||||||||| || |||| |||| |||||||| ||||||||||||    
T  9152492 tttttagattcattgagtaattgatgtatctagtctaaaatatagaccaaatacatcaattatttaatg 9152424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 299 - 382
Target Start/End: Original strand, 5240247 - 5240330
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||  || |||||||||||||| |||||||||    
T  5240247 aaaatttgattttttagatacattgaataattaatgtatctagtatataataaagtttagatacattaattattcaatgtatct 5240330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 421
Target Start/End: Original strand, 29486530 - 29486640
Alignment:
Q  310 ttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatctnnnnnnnttaaattttgcttataatag 409  Q
    ||||| ||||||||||||| ||||||||||||| ||| |||||||||||||| |||||||||| |||||||||       | | ||||||||||||||||    
T  29486530 ttttagatacattgaataattaatgtatctagtttatgataaagactaaatatattaattattcaatgtatct-aaaaagtcagattttgcttataatag 29486628  T
Q  410 tgattggagaga 421  Q
    |||| |||||||    
T  29486629 tgatcggagaga 29486640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 42364329 - 42364258
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtat 380  Q
    |||||| ||||||||||||| ||  ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  42364329 tttttagatacattgaataattagggtatctagtttataataaagactacatacattaattattcaatgtat 42364258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 21032563 - 21032636
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| ||||||||||||| ||||||||  ||| |||||||||||||| |||||||||||||| ||| |||||    
T  21032563 tttttatatacattgaataattaatgtattcagtctataataaagactagatacattaattattcaatatatct 21032636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 21032641 - 21032570
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtat 380  Q
    |||||| ||| ||||||||| ||||||||||||| | || || ||||| ||||||||||||||| |||||||    
T  21032641 tttttagatatattgaataattaatgtatctagtctttattatagactgaatacattaattattcaatgtat 21032570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 382
Target Start/End: Complemental strand, 892673 - 892587
Alignment:
Q  295 agcaaaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||||||||| ||||  |||| ||||||||||   |||||||||||||||| || |||  |||||||||||||||| |||| ||||    
T  892673 agcaaaaatttactttta-aaattcattgaataacggatgtatctagtatatagtatagaacaaatacattaattattcaatgaatct 892587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 382
Target Start/End: Complemental strand, 5240336 - 5240262
Alignment:
Q  308 ttttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||||| ||||||||||||| |||||||||||   | || || | |||| |||||||||||||| |||||||||    
T  5240336 ttttttagatacattgaataattaatgtatctaaactttattatatactagatacattaattattcaatgtatct 5240262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 7604209 - 7604279
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaatt 369  Q
    ||||||| | |||||| ||| | ||||||| ||||| ||| ||| ||||||||||||||||| ||||||||    
T  7604209 aaaatttcactttttagatatactgaataagtaatgcatcaagtctataataaagactaaatccattaatt 7604279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 42364251 - 42364324
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||||||||||||||||| |||||||| |||| | || || | |||| ||||  |||||||| |||||||||    
T  42364251 tttttaaatacattgaataattaatgtatgtagtctttattataaactagataccctaattattcaatgtatct 42364324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 377
Target Start/End: Complemental strand, 5004061 - 5004005
Alignment:
Q  321 ttgaataaataatgtatctagtatataataaagactaaatacattaattatttaatg 377  Q
    |||||||| ||||||||||| | ||||||| ||||||||||||| | ||||| ||||    
T  5004061 ttgaataattaatgtatctaatttataatatagactaaatacatcagttattcaatg 5004005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 8567987 - 8567955
Alignment:
Q  307 attttttaaatacattgaataaataatgtatct 339  Q
    |||||||||||||||||||||| ||||||||||    
T  8567987 attttttaaatacattgaataattaatgtatct 8567955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 297 - 418
Target Start/End: Complemental strand, 15794885 - 15794764
Alignment:
Q  297 caaaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatctnnnnnnnttaaatt 396  Q
    ||||| |||| |||||| |||| |||||| || |||||||| |||| |||||||||||| | |||||||||||||| |||||||||       | |||||    
T  15794885 caaaattttatttttttgaatatattgaagaattaatgtatttagtctataataaagaccagatacattaattattcaatgtatctaaaacaatgaaatt 15794786  T
Q  397 ttgcttataatagtgattggag 418  Q
    || |||||||||||||||||||    
T  15794785 ttacttataatagtgattggag 15794764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 22720615 - 22720542
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| ||||||||||||| ||||||||  ||| |||||||||||||| |||||||||||||| |||||||||    
T  22720615 tttttagatacattgaataattaatgtatgcagtctataataaagactagatacattaattattcaatgtatct 22720542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 22768253 - 22768180
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| ||||||||||||| ||||| ||  ||| |||||||||||||| |||||||||||||| |||||||||    
T  22768253 tttttagatacattgaataattaatgaatgcagtctataataaagactagatacattaattattcaatgtatct 22768180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 41622126 - 41622201
Alignment:
Q  307 attttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||||| ||||||||||||| || ||||  |||| |||||||||||||| |||||||||| ||| |||||||||    
T  41622126 attttttagatacattgaataattagtgtacgtagtctataataaagactagatacattaatcattcaatgtatct 41622201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 22720537 - 22720610
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| ||||||||||||| ||||||||||||| | || || |||||  |||||||||||||| |||||||||    
T  22720537 tttttagatacattgaataattaatgtatctagtctttattatagactgcatacattaattattcaatgtatct 22720610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 30404042 - 30403970
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattat 371  Q
    ||||||| |||||||||||| |||||| || |||| ||| | || | ||||||||||||||||||||||||||    
T  30404042 aaaatttcattttttaaatatattgaacaattaatttatgttgtttgtaataaagactaaatacattaattat 30403970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 382
Target Start/End: Complemental strand, 52673717 - 52673634
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||||| | |||||| ||||||||||||| ||||||||| |   ||||||||| |||| |||||||||||||| ||| |||||    
T  52673717 aaaatttcactttttagatacattgaataattaatgtatccatactataataaaaactagatacattaattattcaatatatct 52673634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 2411875 - 2411948
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||||||||||||||||||   |||||||||||  | |||  | ||||||||||| |||||||||||||||||    
T  2411875 tttttaaatacattgaataatgtatgtatctagtcaagaatctaaactaaatacataaattatttaatgtatct 2411948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 372
Target Start/End: Original strand, 5924525 - 5924593
Alignment:
Q  304 ttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatt 372  Q
    |||||||||||||| |||| ||||||||||||||||| | |||| |||  |||| |||||||| |||||    
T  5924525 ttaattttttaaattcattcaataaataatgtatctaatctatattaagaactacatacattatttatt 5924593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 22768176 - 22768248
Alignment:
Q  310 ttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||| ||||||||||||| ||||||||||||| | || || |||||  || ||||||||||| |||||||||    
T  22768176 ttttagatacattgaataattaatgtatctagtctttattatagactgcattcattaattattcaatgtatct 22768248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 30990628 - 30990684
Alignment:
Q  314 aaatacattgaataaataatgtatctagtatataataaagactaaatacattaatta 370  Q
    |||| |||||||||| ||||||||||||| | ||||| ||||||||||||| |||||    
T  30990628 aaattcattgaataactaatgtatctagtttgtaatatagactaaatacatcaatta 30990684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 49083072 - 49083141
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| || |||||||||| ||||||||||||||    ||||||| ||  |||||||||||||||||||||||    
T  49083072 tttttagatgcattgaataattaatgtatctagta----ataaagattagttacattaattatttaatgtatct 49083141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 369
Target Start/End: Original strand, 15794796 - 15794855
Alignment:
Q  310 ttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaatt 369  Q
    ||||| ||||||||||||| |||||||||| || | || || ||||||||||||||||||    
T  15794796 ttttagatacattgaataattaatgtatctggtctttattatagactaaatacattaatt 15794855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 52760264 - 52760342
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatg 377  Q
    ||||||||| |||||| ||  |||||||||   |||||| ||||||||||||  |||||||||||| | ||||||||||    
T  52760264 aaaatttaactttttagatttattgaataacacatgtatttagtatataatattgactaaatacataagttatttaatg 52760342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 41622206 - 41622133
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| ||||||||||| | ||||||||||||| | || || ||||||  |||| |||||||| |||||||||    
T  41622206 tttttagatacattgaatgattaatgtatctagtctttattatagactacgtacactaattattcaatgtatct 41622133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 372
Target Start/End: Complemental strand, 5418738 - 5418710
Alignment:
Q  344 tataataaagactaaatacattaattatt 372  Q
    |||||||||||||||||||||||||||||    
T  5418738 tataataaagactaaatacattaattatt 5418710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 372
Target Start/End: Original strand, 42299290 - 42299354
Alignment:
Q  308 ttttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatt 372  Q
    |||||||| | |||||||||| ||||| ||||| || | |||||| || ||||||||||||||||    
T  42299290 ttttttaagttcattgaataattaatgcatctaatacaaaataaaaaccaaatacattaattatt 42299354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 44626183 - 44626231
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatata 347  Q
    ||||||| |||||| | ||||||||||||| ||||||||||||| ||||    
T  44626183 aaaattttatttttcagatacattgaataactaatgtatctagtctata 44626231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 382
Target Start/End: Original strand, 29938637 - 29938719
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||||| | |||||| ||||||| ||||| |||||||||||||||| ||||||||||| |||||||||||||| |||||||||    
T  29938637 aaaatttcactttttagatacatt-aataattaatgtatctagtatacaataaagactagatacattaattattcaatgtatct 29938719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 14093160 - 14093119
Alignment:
Q  339 tagtatataataaagactaaatacattaattatttaatgtat 380  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  14093160 tagtatataataaagactagatacattaattatttaatgtat 14093119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 3989612 - 3989548
Alignment:
Q  316 atacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtat 380  Q
    ||||||||||||| | ||||||||||| |||||||||||||| | ||||| ||||||| ||||||    
T  3989612 atacattgaataattgatgtatctagtctataataaagactagaaacattgattattttatgtat 3989548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 7632889 - 7632809
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgta 379  Q
    |||| |||| |||||| ||||| ||||||| |||||||||  || |||||||||||||| ||||||| |||||| ||||||    
T  7632889 aaaacttaactttttagatacactgaataattaatgtatccggtctataataaagactagatacattgattattgaatgta 7632809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 370
Target Start/End: Complemental strand, 3257802 - 3257740
Alignment:
Q  308 ttttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaatta 370  Q
    |||||||||| |||| ||||| |||| |||||||| |||||||||||  ||||||||||||||    
T  3257802 ttttttaaattcattcaataattaatatatctagtctataataaagaacaaatacattaatta 3257740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 26388300 - 26388227
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| ||| ||||||||| ||||||||  ||| ||||||||||| || |||||||||||||| ||| |||||    
T  26388300 tttttatatatattgaataattaatgtattcagtctataataaagattagatacattaattattcaatatatct 26388227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 8051005 - 8051081
Alignment:
Q  305 taattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatc 381  Q
    |||||||||||||| ||||||||| |||||||| || | |||||    || ||||||||||||||||| ||||||||    
T  8051005 taattttttaaatatattgaataattaatgtatataatctataaatgtgattaaatacattaattattaaatgtatc 8051081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 33123120 - 33123049
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtat 380  Q
    |||||| ||||| | ||||| ||| ||||| ||| ||||| |||||||| |||||||||||||| |||||||    
T  33123120 tttttagatacacttaataattaacgtatcaagtctataaaaaagactagatacattaattattcaatgtat 33123049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 8030437 - 8030356
Alignment:
Q  295 agcaaaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatg 377  Q
    |||||||||||| | |||||||| |||| |||||||||||||| | || || ||||||||| | |||| ||| ||||||||||    
T  8030437 agcaaaaattta-tcttttaaattcattcaataaataatgtatgttgtctacaataaagaccacatacgttatttatttaatg 8030356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 1158358 - 1158285
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||||||||||||||||| | |||||| | || || |||| ||||  ||||||||||||||| |||| ||||    
T  1158358 tttttaaatacattgaataattgatgtatttggtctagaatatagaccgaatacattaattattcaatgaatct 1158285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 14589652 - 14589579
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| |||||||||||||  ||| | ||  || |||||||||||||| |||||| ||||||| |||||||||    
T  14589652 tttttagatacattgaataatcaatctgtccggtctataataaagactagatacatgaattattcaatgtatct 14589579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 29938724 - 29938652
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| ||||||||||||| ||||||||||||| | || |  | |||| |||||||||||| |||||||||||    
T  29938724 tttttagatacattgaataattaatgtatctagtctttattgtatactagatacattaatta-ttaatgtatct 29938652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 33123042 - 33123075
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagt 342  Q
    |||||||||||||||||||| |||||||||||||    
T  33123042 tttttaaatacattgaataattaatgtatctagt 33123075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 20890225 - 20890157
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatg 377  Q
    |||||||||||||||||| | || |||||||   ||||||| |  ||||||||||||| ||||||||||    
T  20890225 tttttaaatacattgaatgattattgtatctgacatataattataactaaatacattagttatttaatg 20890157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 408
Target Start/End: Complemental strand, 4132506 - 4132397
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatctnnnnnnnttaaatttt 398  Q
    |||| |||| |||||| ||||||||||||  |||||||| |||| ||||||||| |||| |||||||||||||| |||||||||       | |||||||    
T  4132506 aaaacttaactttttagatacattgaatatttaatgtatttagtctataataaatactatatacattaattattcaatgtatctaaaaaagtgaaatttt 4132407  T
Q  399 gcttataata 408  Q
    ||||||||||    
T  4132406 gcttataata 4132397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 382
Target Start/End: Original strand, 4132404 - 4132491
Alignment:
Q  295 agcaaaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||||| || | ||||||| ||||||||||||| |||||||| |||||| || || |||||||||||||||| |||| |||||||||    
T  4132404 agcaaaatttcacttttttagatacattgaataattaatgtatatagtatttattatagactaaatacattaaatattcaatgtatct 4132491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 382
Target Start/End: Complemental strand, 41115669 - 41115586
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||| ||||||||||| |||||||  |||| ||||||||||| | ||||||||||| || ||||||||||| || |||||||||    
T  41115669 aaaacttaattttttatatacattacataattaatgtatctactctataataaagattagatacattaattgttcaatgtatct 41115586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 7107743 - 7107670
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| ||||||||||||| | |||||||||||  | |||  | || |||||||| |||||||||||||||||    
T  7107743 tttttagatacattgaataatttatgtatctagtcaaaaatctaaaccaaatacataaattatttaatgtatct 7107670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 21387695 - 21387630
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacat 364  Q
    ||||||| | |||||| || |||| ||||||| |||||| | ||||||||||||||||| ||||||    
T  21387695 aaaattttactttttagattcatttaataaatgatgtatgtggtatataataaagactacatacat 21387630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 48748612 - 48748541
Alignment:
Q  311 tttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||||| ||||||||| ||||||||||||| ||||||||| | |||||| |||||||||||||| |||||    
T  48748612 tttaaatatattgaataattaatgtatctagtttataataaatattaaatatattaattatttaatatatct 48748541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 35239684 - 35239757
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| ||||||||||||| ||||||||  ||| |||||||||||||| ||||||||| |||| |||||||||    
T  35239684 tttttagatacattgaataattaatgtattaagtctataataaagactagatacattaactattcaatgtatct 35239757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 32186991 - 32186935
Alignment:
Q  316 atacattgaataaataatgtatctagtatataataaagactaaatacattaattatt 372  Q
    |||||||| |||| ||||||||||||| |||||||||||||| ||||||||||||||    
T  32186991 atacattggataattaatgtatctagtttataataaagactatatacattaattatt 32186935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 35239761 - 35239689
Alignment:
Q  310 ttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||| ||||||||||||  ||||||||||||| | || || ||||| ||||||||||||||| |||||||||    
T  35239761 ttttagatacattgaatagttaatgtatctagtctttattatagacttaatacattaattattcaatgtatct 35239689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 367
Target Start/End: Complemental strand, 26389502 - 26389443
Alignment:
Q  308 ttttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaa 367  Q
    ||||| ||||| ||||||||| ||||||||||||| ||||||||| |||| |||||||||    
T  26389502 tttttaaaatatattgaataattaatgtatctagtctataataaatactagatacattaa 26389443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 381
Target Start/End: Original strand, 42225586 - 42225669
Alignment:
Q  298 aaaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatc 381  Q
    ||||| ||||||||||| |||||||||||||   |||||||||||  ||||   | ||||||||||| ||||||||||||||||    
T  42225586 aaaaaattaattttttagatacattgaataatgtatgtatctagtcaataacctaaactaaatacataaattatttaatgtatc 42225669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 53711979 - 53711899
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtat 380  Q
    |||||||||||||| | ||| ||||||||| ||| ||||||||| ||||  |||||  ||||||||||||||||||| ||||    
T  53711979 aaaatttaattttt-atatatattgaataattaacgtatctagtctatatgaaagatcaaatacattaattatttaaagtat 53711899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 382
Target Start/End: Original strand, 29497381 - 29497464
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||||| | |||||| ||||||||| ||| ||||||||  ||| || ||||||||||| ||| ||||||| || |||||||||    
T  29497381 aaaattttactttttagatacattgactaattaatgtattcagtctacaataaagactagatatattaattgttcaatgtatct 29497464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 50335032 - 50334957
Alignment:
Q  307 attttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||||| ||| ||||||||| ||||||||  |   ||||||||||| || |||||||||||||| |||||||||    
T  50335032 attttttagatatattgaataattaatgtatacaacctataataaagattagatacattaattattcaatgtatct 50334957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 30082295 - 30082257
Alignment:
Q  344 tataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  30082295 tataataaagactaaaaacattaattattcaatgtatct 30082257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 32186910 - 32186992
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatc 381  Q
    ||||||| | ||||||||||||| |||||| |||||||| |||| | || || | |||| |||||||||||||  ||||||||    
T  32186910 aaaatttcactttttaaatacatggaataattaatgtatatagtctttattataaactagatacattaattatccaatgtatc 32186992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 22003909 - 22003836
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| ||||||||||||| | |||||||||||| | |||  | |||||||| || ||||||| |||||||||    
T  22003909 tttttagatacattgaataatttatgtatctagtaaagaatctaaactaaatatataaattattcaatgtatct 22003836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 22011426 - 22011353
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| ||||||||||||| | |||||||||||| | |||  | |||||||| || ||||||| |||||||||    
T  22011426 tttttagatacattgaataatttatgtatctagtaaagaatctaaactaaatatataaattattcaatgtatct 22011353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 299 - 382
Target Start/End: Complemental strand, 43731238 - 43731155
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||||| |||||||| ||||||||||||  ||||||||||| | | ||||||| |||| |||||||||||||| |||||||||    
T  43731238 aaaatttcattttttagatacattgaatagttaatgtatctattttttaataaaaactagatacattaattattgaatgtatct 43731155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 382
Target Start/End: Complemental strand, 897121 - 897047
Alignment:
Q  308 ttttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||||| ||||||||||||| |||||||||   | || ||| |||||||||||||||||||||| |||||||||    
T  897121 ttttttagatacattgaataattaatgtatcccatttacaatgaagactaaatacattaattattaaatgtatct 897047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 14773744 - 14773816
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattat 371  Q
    ||||||| ||||||| |||| ||||||||| || |||||| ||| ||||||| |||||| |||||||||||||    
T  14773744 aaaattttattttttgaatatattgaataattattgtatccagtctataatacagactagatacattaattat 14773816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 8352164 - 8352239
Alignment:
Q  307 attttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||||| ||||||||||| | ||||||||||| ||| || || ||| ||||||||||||||||| ||| |||||    
T  8352164 attttttagatacattgaatgattaatgtatctaatatttattatagaataaatacattaattattcaatatatct 8352239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 31635864 - 31635783
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtat 380  Q
    ||||||| | |||||| ||||||||||||| |||| |||||||| ||||||||  ||  |||||||| |||||| |||||||    
T  31635864 aaaatttcactttttagatacattgaataactaatatatctagtctataataagcaccgaatacatttattattcaatgtat 31635783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 39969796 - 39969854
Alignment:
Q  308 ttttttaa-atacattgaataaataatgtatctagtatataataaagactaaatacatt 365  Q
    |||||||| ||||||||||||| | ||||||||| | ||||||||| ||||||||||||    
T  39969796 ttttttaagatacattgaataattgatgtatctaatttataataaatactaaatacatt 39969854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 50105681 - 50105759
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatg 377  Q
    |||| ||||||||||| || ||||||||||  |||||||||  | ||||||| | |||| ||||||||||||| |||||    
T  50105681 aaaaattaattttttagattcattgaataatcaatgtatctgatctataatataaactagatacattaattatctaatg 50105759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 382
Target Start/End: Complemental strand, 51613021 - 51612947
Alignment:
Q  308 ttttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||||| ||||||||||||| |||| |||||| | || || ||||||   |||||||||||||| |||||||||    
T  51613021 ttttttagatacattgaataattaatatatctaatttacaacaaagaccggatacattaattattgaatgtatct 51612947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 6793618 - 6793667
Alignment:
Q  298 aaaaatttaattttttaaatacattgaataaataatgtatctagtatata 347  Q
    ||||| |||||||||||||| |||||||||| |||||||  |||||||||    
T  6793618 aaaaagttaattttttaaattcattgaataattaatgtacttagtatata 6793667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 26468315 - 26468356
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatcta 340  Q
    ||||||| | |||||||||||||||||||| |||||||||||    
T  26468315 aaaatttcactttttaaatacattgaataattaatgtatcta 26468356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 375
Target Start/End: Original strand, 1599060 - 1599128
Alignment:
Q  307 attttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaa 375  Q
    |||||||| || |||| ||| | ||||||||||  |||||| || ||||||||||||||| ||||||||    
T  1599060 attttttagattcattaaatgattaatgtatctgatatatattatagactaaatacattagttatttaa 1599128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 382
Target Start/End: Complemental strand, 325322 - 325248
Alignment:
Q  308 ttttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||||| |||||||||||| |||||||||| || || ||| ||||||| |||||||||||||| |||||||||    
T  325322 ttttttaagtacattgaataattaatgtatctcgtttacaatgaagactagatacattaattattaaatgtatct 325248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 27939110 - 27939032
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatg 377  Q
    ||||||| |||||||| |||||||||||||  |||||| | ||| |||||||||||||| ||||||| |||||| ||||    
T  27939110 aaaattttattttttagatacattgaataatgaatgtacccagtctataataaagactagatacattgattattcaatg 27939032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 6197935 - 6197862
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| ||||||| ||||| |||||||| || | ||| |||||||||| ||||||||| ||||||||||||||    
T  6197935 tttttagatacattaaataattaatgtatttaatctatgataaagactagatacattaactatttaatgtatct 6197862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 28205819 - 28205892
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatt 372  Q
    |||||||||||||| | ||||||||||||| |||||||||  ||  |||| |||||||| ||||||||||||||    
T  28205819 aaaatttaatttttcagatacattgaataattaatgtatcatgtccataacaaagactagatacattaattatt 28205892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 382
Target Start/End: Complemental strand, 33837694 - 33837620
Alignment:
Q  308 ttttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    ||||||||||||||||||||| | |||||||||||  | |||  | ||||||| ||| |||||||||||||||||    
T  33837694 ttttttaaatacattgaataatttatgtatctagtcaagaatctaaactaaatgcataaattatttaatgtatct 33837620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 382
Target Start/End: Original strand, 6197857 - 6197930
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| ||||||| ||||  ||||||||||||| | ||  | ||| |||||||||||||||||||||||||||    
T  6197857 tttttagatacattaaatagttaatgtatctagtctttatcatagattaaatacattaattatttaatgtatct 6197930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 38779254 - 38779330
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaat 376  Q
    |||||| ||||||||||||  |||||||||||||||||| || | ||| ||| | |||| ||||||||||||||||||    
T  38779254 aaaattcaattttttaaatttattgaataaataatgtatatattctat-atataaactagatacattaattatttaat 38779330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 23442864 - 23442903
Alignment:
Q  9 caacaatatgagataatggtaccgttagatgtgttatctt 48  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  23442864 caacaaaatgagattatggtaccgttagatgtgttatctt 23442903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 13325126 - 13325185
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatt 372  Q
    |||||| ||||||||||||| ||||||||||||| ||||||    |||||||||||| ||||||    
T  13325126 tttttagatacattgaataattaatgtatctagtttataat----actaaatacattgattatt 13325185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 377
Target Start/End: Complemental strand, 29358725 - 29358656
Alignment:
Q  308 ttttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatg 377  Q
    ||||||| |||||||| |||||| |||||| |||| |||| || || ||| |||||||||||||| ||||    
T  29358725 ttttttagatacattgtataaatgatgtatttagtttatattatagtctagatacattaattattcaatg 29358656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 39199562 - 39199626
Alignment:
Q  307 attttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatt 372  Q
    |||||||||||||||||||||| |||| ||| | |  ||||||| ||||||||||||||| |||||    
T  39199562 attttttaaatacattgaataattaatatatat-gattataatatagactaaatacattagttatt 39199626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 41915707 - 41915634
Alignment:
Q  309 tttttaaatacattgaataaataatgtatctagtatataataaagactaaatacattaattatttaatgtatct 382  Q
    |||||| |||||||||||||   |||||||||||  |||||  | || |||||||| |||||||||||||||||    
T  41915707 tttttagatacattgaataatgtatgtatctagtcaataatctaaaccaaatacataaattatttaatgtatct 41915634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 44577234 - 44577193
Alignment:
Q  299 aaaatttaattttttaaatacattgaataaataatgtatcta 340  Q
    ||||||| | |||||||||||||||||||| |||||||||||    
T  44577234 aaaattttaatttttaaatacattgaataattaatgtatcta 44577193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 23443489 - 23443529
Alignment:
Q  199 taagcatgttaattaggaaattttggtggtaatgaaaattc 239  Q
    |||| |||||||||||| ||||||||||||| |||||||||    
T  23443489 taaggatgttaattagggaattttggtggtattgaaaattc 23443529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 38764395 - 38764447
Alignment:
Q  320 attgaataaataatgtatctagtatataataaagactaaatacattaattatt 372  Q
    ||||||||| ||||||||||||| ||||||| || ||||||| | ||||||||    
T  38764395 attgaataattaatgtatctagtctataatataggctaaatatactaattatt 38764447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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