View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_high_22 (Length: 396)
Name: NF0962_high_22
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 29 - 389
Target Start/End: Complemental strand, 10602221 - 10601861
Alignment:
| Q |
29 |
acctttaacatgctcttttccttcgtcagaatccgaaacatccacgctttcataagatttggcattgtctttggctttgacatgggatttgcatttggct |
128 |
Q |
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| T |
10602221 |
acctttgacatgctcttttccttcgtcagaatcagaaacatccacgctttcataaggtttggcattgtctttggctttgacatgggatttgcatttggct |
10602122 |
T |
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| Q |
129 |
ttagcaacattaacatcatcaagaagattcacagtttcattaggtttagccctttctttggctttggcaacatttacatcatcgtcagaaacattttcca |
228 |
Q |
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| T |
10602121 |
ttagcaacattaacatcatcacgaagattcacagtttcattaggtttagccctttctttggctttggcaacatttacatcatcgtcagaaacattttcca |
10602022 |
T |
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| Q |
229 |
cactttttgctttttgtttctttgatgtatcattcttgtttgaagaagaacccttcttctcaaaggtagtagaagttgctaaactaccataatctgaatg |
328 |
Q |
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| T |
10602021 |
cactttttgctttttgtttctttgatgtatcattcttgtttgaagaagaacccttcttctcaaaggtagtagaagttgctacactaccataatctgaatg |
10601922 |
T |
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| Q |
329 |
ctccacttcatcattctttatagaaggacttttatccttcacctcctcattattcatctca |
389 |
Q |
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| T |
10601921 |
ctccacttcatcattctttatagaaggacttttatccttcacctcctcattattcatctca |
10601861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 377
Target Start/End: Original strand, 16977651 - 16977747
Alignment:
| Q |
281 |
cttcttctcaaaggtagtagaagttgctaaactaccataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctca |
377 |
Q |
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| T |
16977651 |
cttcttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgctcatctcctca |
16977747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 16977747 - 16977812
Alignment:
| Q |
314 |
accataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctcatt |
379 |
Q |
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|||||||||||||||||||| |||| |||| |||| |||||||||||||||||||| ||||||||| |
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| T |
16977747 |
accataatctgaatgctccatttcaccattgtttacagaaggacttttatccttcatctcctcatt |
16977812 |
T |
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