View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0962_high_25 (Length: 392)

Name: NF0962_high_25
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0962_high_25
NF0962_high_25
[»] chr3 (3 HSPs)
chr3 (77-296)||(46993653-46993872)
chr3 (288-363)||(46994149-46994224)
chr3 (16-51)||(50880065-50880100)
[»] chr6 (1 HSPs)
chr6 (185-363)||(2038873-2039062)
[»] chr5 (2 HSPs)
chr5 (185-355)||(25074627-25074808)
chr5 (185-355)||(25132596-25132777)
[»] chr8 (1 HSPs)
chr8 (131-188)||(9484451-9484509)
[»] chr7 (2 HSPs)
chr7 (16-51)||(37236196-37236231)
chr7 (16-49)||(9392511-9392544)
[»] chr1 (1 HSPs)
chr1 (16-51)||(17244587-17244622)
[»] chr4 (1 HSPs)
chr4 (135-187)||(52721113-52721166)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 77 - 296
Target Start/End: Original strand, 46993653 - 46993872
Alignment:
Q  77 tataacaatgtattccaagattatttcttttcagttttgaacttaggcaacgttttctataagccgtaaaaattgatcttattcttctt-attaaaaaat 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| |||||| ||||||||||    
T  46993653 tataacaatgtattccaagattatttcttttcagttttgaacttaggcagtgttttctataagctgtaaaaattgatcttatccttcttgattaaaaaat 46993752  T
Q  176 caagtgacccatcctccatgttatgcctaaatttgaaacacccataaaatcatctatagtagcgacgttatgaaattatattcccactcaaataaatagt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46993753 caagtgacccatcctccatgttatgcctaaatttgaaacacccataaaataatctatagtagcgacgttatgaaattatattcccactcaaataaatagt 46993852  T
Q  276 ttaatctgtaattagtattta 296  Q
    ||||| |||||||||||||||    
T  46993853 ttaat-tgtaattagtattta 46993872  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 288 - 363
Target Start/End: Original strand, 46994149 - 46994224
Alignment:
Q  288 tagtatttataataatactaatggggagatggtgtcctcatatcacaactagtagagtatgaaagggtagaaaaag 363  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46994149 tagtatttataataatacaaatggagagatggtgtactcatatcacaactagtagagtatgaaagggtagaaaaag 46994224  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 50880065 - 50880100
Alignment:
Q  16 atcaaaagaagaaaaatccattcttttcaaaacaat 51  Q
    |||||||||||||||||||||| |||||||||||||    
T  50880065 atcaaaagaagaaaaatccattattttcaaaacaat 50880100  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 185 - 363
Target Start/End: Original strand, 2038873 - 2039062
Alignment:
Q  185 catcctccatgttatgcctaaatttgaaacacccataaaatcatctatagtagcgac-gttatgaaattatattcccactcaaataaatagtttaatctg 283  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||   ||| |   |  |||||||||||||||||||||| |||||||||||| ||||||    
T  2038873 catcctccatgttatgcctaaatttgaaaaacccataaaattatgcgtaggaagtagagttatgaaattatattcccacttaaataaatagttcaatctg 2038972  T
Q  284 taattagtattt----------ataataatactaatggggagatggtgtcctcatatcacaactagtagagtatgaaagggtagaaaaag 363  Q
    ||||||| ||||          ||||||||||||||| ||||||| |||  |||||||||| |||||| | |||||||||||||| ||||    
T  2038973 taattagaatttaaccttctccataataatactaatgaggagatgttgtattcatatcacagctagtataatatgaaagggtagagaaag 2039062  T

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Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 185 - 355
Target Start/End: Complemental strand, 25074808 - 25074627
Alignment:
Q  185 catcctccatgttatgcctaaatttgaaacacccataaaatcatctatag-tagcgacgttatgaaattatattcccactcaaataaatagtttaatctg 283  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||   ||| |||    |||||||||||||||||||||| |||||||||||| ||||||    
T  25074808 catcctccatgttatgcctaaatttgaaaaacccataaaattatgcgtaggtagtagagttatgaaattatattcccacttaaataaatagttcaatctg 25074709  T
Q  284 taattagtattt----------ataataatactaatggggagatggtgtcctcatatcacaactagtagagtatgaaagggt 355  Q
    ||||||  ||||          ||||||||||||||| ||||||| |||  |||||||||| |||||| | |||||||||||    
T  25074708 taattataatttaaccttctccataataatactaatgaggagatgttgtattcatatcacagctagtataatatgaaagggt 25074627  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 185 - 355
Target Start/End: Complemental strand, 25132777 - 25132596
Alignment:
Q  185 catcctccatgttatgcctaaatttgaaacacccataaaatcatctatag-tagcgacgttatgaaattatattcccactcaaataaatagtttaatctg 283  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||   ||| |||    |||||||||||||||||||||| |||||||||||| ||||||    
T  25132777 catcctccatgttatgcctaaatttgaaaaacccataaaattatgcgtaggtagtagagttatgaaattatattcccacttaaataaatagttcaatctg 25132678  T
Q  284 taattagtattt----------ataataatactaatggggagatggtgtcctcatatcacaactagtagagtatgaaagggt 355  Q
    ||||||  ||||          ||||||||||||||| ||||||| |||  |||||||||| |||||| | |||||||||||    
T  25132677 taattataatttaaccttctccataataatactaatgaggagatgttgtattcatatcacagctagtataatatgaaagggt 25132596  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 9484451 - 9484509
Alignment:
Q  131 ttctataagccgtaaaaattgatcttattcttctt-attaaaaaatcaagtgacccatc 188  Q
    |||||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||||    
T  9484451 ttctataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacccatc 9484509  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 37236196 - 37236231
Alignment:
Q  16 atcaaaagaagaaaaatccattcttttcaaaacaat 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  37236196 atcaaaagaagaaaaatccattcttttcaaaacaat 37236231  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 9392544 - 9392511
Alignment:
Q  16 atcaaaagaagaaaaatccattcttttcaaaaca 49  Q
    |||||||||||||||||||||| |||||||||||    
T  9392544 atcaaaagaagaaaaatccattattttcaaaaca 9392511  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 17244587 - 17244622
Alignment:
Q  16 atcaaaagaagaaaaatccattcttttcaaaacaat 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  17244587 atcaaaagaagaaaaatccattcttttcaaaacaat 17244622  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 52721166 - 52721113
Alignment:
Q  135 ataagccgtaaaaattgatcttattcttctt-attaaaaaatcaagtgacccat 187  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||| |||||||    
T  52721166 ataagctgtaaaaattgatcttatacttcttgattaaaaaatcaagagacccat 52721113  T

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