View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_high_28 (Length: 388)
Name: NF0962_high_28
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_high_28 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 133 - 388
Target Start/End: Complemental strand, 29657006 - 29656754
Alignment:
| Q |
133 |
catagttcttcaatttggtttgttcatcataaaatagaaccataagaataagatatgtatttataaagttcgaaaataaacacaattaggcagtggaaaa |
232 |
Q |
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| T |
29657006 |
catagttcttcaatttggtttgttcatcataaaatagaaccataagaataagatatgtatttataaagttcgaaaataaacacaattaggcagtggaaaa |
29656907 |
T |
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| Q |
233 |
tattggttagtattactatttagttgaccaaagtagtttttgtttcattcaatatgaatgtgacttactagttgccgctagttcgacaatataaatggca |
332 |
Q |
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| T |
29656906 |
tattggttagtattactatttagttgaccaaagtagtttttgtttcattcaatatgaatgtgacttcctagtt---gctagttcgacaatataaatggca |
29656810 |
T |
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| Q |
333 |
ttgccattcacggttagttagctgagatatctaactgttcattaatttctaccctt |
388 |
Q |
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| T |
29656809 |
ttgccattcacggttagttagctgagatatctaactgttcattaatttctaccctt |
29656754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 29657110 - 29657040
Alignment:
| Q |
29 |
acatacatcccataacaacaccaaatttgaaactccttttattttatttgtttcttttagtggacagtaat |
99 |
Q |
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| T |
29657110 |
acatacatcccataacaacaccaaatttgaaactccttttattttatttgtttcttttagtggacagtaat |
29657040 |
T |
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