View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_high_29 (Length: 387)
Name: NF0962_high_29
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 689174 - 688792
Alignment:
| Q |
1 |
ttgagatcaacaaaacatgtcaatttattttacatccaatcaattctgactattcaaaatgtggaatcgaaaataagccaaatctatcataaatcgattc |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
689174 |
ttgagaccaacaaaacatgtcaatttattttacatccaatcaattctgactactccaaatgtggaaccgaatataagccaaatctatcataaatcgattc |
689075 |
T |
|
| Q |
101 |
tgcnnnnnnnnttcgttgttcacttaaaagctcctcactgcatgtctttgtgcaaagagatttctaatgtaaagttagaaaggaaattttgtttgcattc |
200 |
Q |
| |
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||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
689074 |
tgcaaaaaaaattagttgttcacttgaaagctcctcactgcatgtctttgtgcaaagagatttcaaatgtaaagttagaaaggaaattttgtttgcattc |
688975 |
T |
|
| Q |
201 |
atatttagtggagaatctcagnnnnnnnnnncctctctatccaccacctcttctgaagaattcggtaggaagaggatatcttagattctggtggtttcaa |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
688974 |
atatttagtggagaatctcagttttttttttcctctctatccaccacctcttctgaagaattcggtaggaagaggatatcttagattctggtggtttcaa |
688875 |
T |
|
| Q |
301 |
agtcttaatggttacgacggagacaaagtcttgcgatgttgggagtttcctatagcaaaacctctattattgaatattgttgg |
383 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
688874 |
agtctcaatggttacgacggagacaaagtcttgcgatgttgggagtttcctatagcaaaacctctattattgaatatttttgg |
688792 |
T |
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