View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_high_50 (Length: 267)
Name: NF0962_high_50
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_high_50 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 26713961 - 26714070
Alignment:
| Q |
30 |
gtatactcttcattgtatatcatannnnnnncttctagttttttaggatcacttttagtttcacaagtgcaatttcctaacagatttcagacttccatca |
129 |
Q |
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| T |
26713961 |
gtatactcttcattgtatatcatatttttttcttctagttttttaggatcacttttagtttcacaagtgcaatttcctaacaggttttagacttccatca |
26714060 |
T |
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| Q |
130 |
atcaaaggta |
139 |
Q |
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|||||||||| |
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| T |
26714061 |
atcaaaggta |
26714070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 26983700 - 26983809
Alignment:
| Q |
30 |
gtatactcttcattgtatatcatannnnnnncttctagttttttaggatcacttttagtttcacaagtgcaatttcctaacagatttcagacttccatca |
129 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
26983700 |
gtatactcttcattgtatatcatatttttttcttctagttttttaggatcacttttagtttcacaagtgcaatttcctaacaggttttagacttccatca |
26983799 |
T |
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| Q |
130 |
atcaaaggta |
139 |
Q |
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|||||||||| |
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| T |
26983800 |
atcaaaggta |
26983809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 26715061 - 26715191
Alignment:
| Q |
136 |
ggtactactgagaataatagtttgtaaatgacggagattgctgcatttcat------------agcaaaacctcttgtaagttttgtttgagtcttattt |
223 |
Q |
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|||||||||| |||||||||||| | ||||||||||| |||||||||||| ||||||||||||| |||||||| || | | ||||||| |
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| T |
26715061 |
ggtactactgggaataatagtttacagatgacggagatcgctgcatttcatgggcacatcagtagcaaaacctcttctaagtttttttcgtggcttattt |
26715160 |
T |
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| Q |
224 |
tttggtaaatacgatgatctcttaccctatg |
254 |
Q |
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| T |
26715161 |
gttagtaaatacgatgatctcttaccctatg |
26715191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 26984800 - 26984930
Alignment:
| Q |
136 |
ggtactactgagaataatagtttgtaaatgacggagattgctgcatttcat------------agcaaaacctcttgtaagttttgtttgagtcttattt |
223 |
Q |
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|||||||||| |||||||||||| | ||||||||||| |||||||||||| ||||||||||||| |||||||| || | | ||||||| |
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| T |
26984800 |
ggtactactgggaataatagtttacagatgacggagatcgctgcatttcatgggcacatcagtagcaaaacctcttctaagtttttttcgtggcttattt |
26984899 |
T |
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| Q |
224 |
tttggtaaatacgatgatctcttaccctatg |
254 |
Q |
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|| ||||||||||||||||||||||||||| |
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| T |
26984900 |
gttagtaaatacgatgatctcttaccctatg |
26984930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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