View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_high_51 (Length: 254)
Name: NF0962_high_51
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 35204198 - 35203997
Alignment:
| Q |
1 |
tgccactaaatgacaacatataagtttgagtcttgcagtttaattcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204198 |
tgccactaaatgacaacatataagtttgagtcttgcagcttaattcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccac |
35204099 |
T |
|
| Q |
101 |
accatttcaggatctatatgcttggtagtactactctttaacgtgatcttgtctaaagtagataataacaaaataatagcaatacactttgcatgaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204098 |
accatttcaggatctatatgcttggtagtactactctttaacgtgatcttgtctaaagtagataataacaaaataatagcaatacactttgcatgaacta |
35203999 |
T |
|
| Q |
201 |
aa |
202 |
Q |
| |
|
|| |
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|
| T |
35203998 |
aa |
35203997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 55859428 - 55859629
Alignment:
| Q |
1 |
tgccactaaatgacaacatataagtttgagtcttgcagtttaattcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
55859428 |
tgccactaaatgacaacatataagtttgagtcttgcagcttaattcttattgtgtgtaacagttttgagccagactaccatagcccacatacagttccac |
55859527 |
T |
|
| Q |
101 |
accatttcaggatctatatgcttggtagtactactctttaacgtgatcttgtctaaagtagataataacaaaataatagcaatacactttgcatgaacta |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
55859528 |
accatttcaggatctatatgcttggtagtactactctctaacgtgatcttgtctaaagtagataataataaaacaatagcaatacactttgcatgaacta |
55859627 |
T |
|
| Q |
201 |
aa |
202 |
Q |
| |
|
|| |
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|
| T |
55859628 |
aa |
55859629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 29275170 - 29274969
Alignment:
| Q |
1 |
tgccactaaatgacaacatataagtttgagtcttgcagtttaattcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29275170 |
tgccactaaatgacaacatataagtttgagtcttgcagcttaattcctattgtgtgtaacagttttgagccagactaccatagcccacatacagttccac |
29275071 |
T |
|
| Q |
101 |
accatttcaggatctatatgcttggtagtactactctttaacgtgatcttgtctaaagtagataataacaaaataatagcaatacactttgcatgaacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
29275070 |
accatttcaggatctatatgcttggtagtactactctctaacgtgatcttgtctaaagtagataataataaaacaatagcaatacactttgcatgaacta |
29274971 |
T |
|
| Q |
201 |
aa |
202 |
Q |
| |
|
|| |
|
|
| T |
29274970 |
aa |
29274969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 3822599 - 3822400
Alignment:
| Q |
1 |
tgccactaaatgacaacatataagtttgagtcttgcagtttaattcc-tattgtgtgtaacagttttgagccagactatcatagcccacatacagtt-cc |
98 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| || |
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|
| T |
3822599 |
tgccactaaatgacagcatataagtttgagtcatgcagcttaattccctattgtgtgtaatagttttgagccagactaccatagcccacatacagtttcc |
3822500 |
T |
|
| Q |
99 |
acaccatttcaggatctatatgcttggtagtactactctttaacgtgatcttgtctaaagtagataataacaaaataatagcaatacactttgcatgaac |
198 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||| ||||||||| ||||||||||| |
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| T |
3822499 |
acaccatttcaggatctatatgcttggcagtactactctctaacgtgagcttgtctaaagtagataatcacaaaacaatagcaat----tttgcatgaac |
3822404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 46267403 - 46267515
Alignment:
| Q |
1 |
tgccactaaatgacaacatataagtttgagtcttgcagtttaattcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |
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| T |
46267403 |
tgccactaaatgacaacatataagtttgagtcttgcagcttaattcctattgtgtgtaacag-tttgagccagactatcatagtccacgtacagttccac |
46267501 |
T |
|
| Q |
101 |
accatttcaggatc |
114 |
Q |
| |
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|||||||||||||| |
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|
| T |
46267502 |
accatttcaggatc |
46267515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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