View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_high_55 (Length: 251)
Name: NF0962_high_55
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_high_55 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 30720606 - 30720380
Alignment:
| Q |
32 |
attcgtcgacttaacctatttttatttggaacttgtcactttgcaatttgtcttgcacctagctctcacatttttggaaatatgaaattcaca-----aa |
126 |
Q |
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| T |
30720606 |
attcgtcgacttcacctatttttatttcgaacttgtcactttgcaatttgtcttgcacctagctctcacatttttcgaaatatgaaattcacacaccaaa |
30720507 |
T |
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| Q |
127 |
ttagtagatgttgaaaacgttttggcaagaacattcatcaatgtgatatccctatccataacaattaccttcggcatattttctttacacttcaaaagat |
226 |
Q |
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| T |
30720506 |
ttagtagaagttggaaacgttttggcaagaacattcatcaatgtgatatccctatccataacaattaacttcgacatattttctttacacttcaaaagat |
30720407 |
T |
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| Q |
227 |
caatacactca--tatagagcccaaga |
251 |
Q |
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| T |
30720406 |
caatacactcatatatagagcccaaga |
30720380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 1196557 - 1196455
Alignment:
| Q |
148 |
ttggcaagaacattcatcaatgtgatatccctatccataacaattaccttcggcatattttctttacacttcaaaagatcaatacactcatatagagccc |
247 |
Q |
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| T |
1196557 |
ttggcaacaacattcatcagcccggtatccctgtcaataacaattaccttcggcatttgttttttacacttcaacagattagcacactcttgtagagccc |
1196458 |
T |
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| Q |
248 |
aag |
250 |
Q |
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| T |
1196457 |
aag |
1196455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 30410234 - 30410131
Alignment:
| Q |
131 |
tagatgttgaaaacgttttggcaagaacattcatcaatgtgatatccctatccataacaattaccttcggcatattttctttacacttcaaaagatcaat |
230 |
Q |
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| T |
30410234 |
tagatgttggaaaggttttggcagcaacattcatcaatatggtatctctatcagtaacaactaccttcaacatattttctttacactttaaaagattaat |
30410135 |
T |
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| Q |
231 |
acac |
234 |
Q |
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|||| |
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| T |
30410134 |
acac |
30410131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 6569696 - 6569756
Alignment:
| Q |
69 |
actttgcaatttgtcttgcacctagctctcacatttttggaaatatgaaattcacaaatta |
129 |
Q |
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| T |
6569696 |
actttgcaatctgtctttcatctagctctcacatttttcaaaatatgatattgacacatta |
6569756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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