View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0962_high_57 (Length: 243)
Name: NF0962_high_57
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_high_57 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 34820174 - 34819953
Alignment:
| Q |
22 |
gcgtctcctttaaagaagaaagggaagagtgataaaggcgagacaaacaagaagaatgatgatagtatttgtacaaagccaccagttgagaaaagagtta |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34820174 |
gcgtctcctttaaagaagaaagggaagagtgataaaggcgagacaaccaagaagaatgatggtagtatttgtacaaagccaccagctgagaaaagagtta |
34820075 |
T |
|
| Q |
122 |
gctgccaagaacataaaggaacgagaataaatgtgtttagtgcaaaagcaataagaagatctaagtctgaatcagaaatctttgctggaagttttattga |
221 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
34820074 |
gctgccaagaacataaaggaatgagactaaatgtgtttagtgcaaaagcaattagaagatccaagtctgaatcagaaatcttggctgggagttttgttga |
34819975 |
T |
|
| Q |
222 |
cgagagtatcaccaaaaatgat |
243 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34819974 |
cgagagtatcaccaaaaatgat |
34819953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 34819893 - 34819841
Alignment:
| Q |
27 |
tcctttaaagaagaaagggaagagtgataaaggcgagacaaacaagaagaatg |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
34819893 |
tcctttaaagaagaaagggaagagtgataaaggcgaggccaacaagaagaatg |
34819841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 34835165 - 34835101
Alignment:
| Q |
87 |
tatttgtacaaagccaccagttgagaaaagagttagctgccaagaacataaaggaacgagaataa |
151 |
Q |
| |
|
||||||||||||| | || || |||||||||||||| || || ||||||||||||| |||||||| |
|
|
| T |
34835165 |
tatttgtacaaagacgccggtcgagaaaagagttaggtgtcatgaacataaaggaatgagaataa |
34835101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University