View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_high_60 (Length: 232)
Name: NF0962_high_60
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_high_60 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 34819671 - 34819892
Alignment:
| Q |
11 |
cacagagcgcaaacaagaaacactagcatcatgaaacatattggagtgattagacttccttgttacgtcaaaatcttcataaaggttgaaatgatccttc |
110 |
Q |
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| T |
34819671 |
cacagagcgcaaacaagaaacactagcatcatgaaacatattggagtgattagacttccttgttgcctcaaaatcttcataaaggttgaaatgatccttc |
34819770 |
T |
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| Q |
111 |
acgaagccagcacgatcgaagttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgaccttcttcttgttggcctcgccttcataac |
210 |
Q |
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| T |
34819771 |
acgaagccagcacgatcgaagttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgacattcttcttgttggcctcgcctttatcac |
34819870 |
T |
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| Q |
211 |
tcttccctttcttctttaaagg |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
34819871 |
tcttccctttcttctttaaagg |
34819892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 34820119 - 34820168
Alignment:
| Q |
183 |
ttcttcttgttggcctcgccttcataactcttccctttcttctttaaagg |
232 |
Q |
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| T |
34820119 |
ttcttcttggttgtctcgcctttatcactcttccctttcttctttaaagg |
34820168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 22080680 - 22080743
Alignment:
| Q |
57 |
tgattagacttccttgttacgtcaaaatcttcataaaggttgaaatgatccttcacgaagccag |
120 |
Q |
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| T |
22080680 |
tgattagacttcctcgctgcctcaaaatcctcaggaaggttgaaatgatctttcacgaagccag |
22080743 |
T |
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