View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_10 (Length: 567)
Name: NF0962_low_10
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 24 - 567
Target Start/End: Original strand, 40694465 - 40695026
Alignment:
| Q |
24 |
catcatcaactaaccaccaggcatcacactactttcagcctaagtgattgttttataggtctctcaaattgctcaaccctttaaaataaatcgattaaaa |
123 |
Q |
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| T |
40694465 |
catcatcaactaaccaccaggcatcacactccttttagcctaagtgattgttttataggtctctcaaattgctcaaccctttaaaataaatcgattaaaa |
40694564 |
T |
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| Q |
124 |
gttatgtttgttccaaaaacaacaataaaattgtaactcggaaaaattgatgaaattgggagttgtaatccaataaatcagagggggtgtttgagtaatg |
223 |
Q |
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| T |
40694565 |
gttacgtttgttccaaaaacaacaataaaattgtaactcggaaaaattgatgaaattgggagttgtaatccaataaatcagagggggtgtttgagtaatg |
40694664 |
T |
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| Q |
224 |
tgaagagttagctagtaacaaactatcaataacatattttcagcacaattaaccttgtgaatccttttact-tnnnnnnnncttgtgaatcctggaaaac |
322 |
Q |
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| T |
40694665 |
tgaagagttagctagtaacaaactatcaataacatattttcagcacaattaaccttgtgaatccttttgctaaaaaaaaaacttgtgaatcctggaaaac |
40694764 |
T |
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| Q |
323 |
ttgacgagaaaatcatcaaaatggtaataaataagatttggagtgtaattatggtttcattggaagtatttgctaaatatagctgcag------------ |
410 |
Q |
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| T |
40694765 |
ttgacgagaaaatcatcaaaatggtaataaataagatttggagtgtaattatggtttcattggaagtatttg-taaatatagctgcagccagcagttgtg |
40694863 |
T |
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| Q |
411 |
------ccagcagttgtgctaatgagaccaaatagaaggagcagggaagcaacaactgannnnnnnnnnnnnnnngagagaagattattagttgttatgt |
504 |
Q |
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| T |
40694864 |
ttaattccagcagttgtgttaatgagaccaaatagaaggagcaggggagcaacaactgatttttgttttgtttttgagagaagattattagttgttatgt |
40694963 |
T |
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| Q |
505 |
caccagaaagagtggacactcatagaatctacctaacaaaatggaaacatgacaatttaatta |
567 |
Q |
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| T |
40694964 |
caccagaaagagtggacactcatagaatctaccaaacaaaatggaaacatgacaatttaatta |
40695026 |
T |
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