View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0962_low_11 (Length: 544)
Name: NF0962_low_11
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 8e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 92 - 279
Target Start/End: Complemental strand, 36545587 - 36545400
Alignment:
| Q |
92 |
aagaggaatataaaacacaaattttcagttcagcttctgaacacaaaagnnnnnnngaataagaatagacacacaaagtatgcatgctacgttgtttcct |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36545587 |
aagaggaatataaaacacaaattttcagttcagcttctgaacacaaaagaaaaaaagaataagaatagacacacaaagtatgcatgctacgttgtttcct |
36545488 |
T |
|
| Q |
192 |
taaaattgggaaaggaacattttccacaagacccttttctacgatcattgtcacataaatgaaacacatacacaaatagaacatctac |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36545487 |
taaaattgggaaaggaacattttccacaagacccttttctacgatcattgtcacataaatgaaacacatacacatatagaacatctac |
36545400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 377 - 538
Target Start/End: Complemental strand, 36545301 - 36545140
Alignment:
| Q |
377 |
taataaaaggagaaagagagagagaaccatatattaatgttgataatgaggagaatgcaaatgattcttctattccatgtagcatgaaattcagtgagac |
476 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36545301 |
taataaaaggagaaagagagacagaaccatatattaaggttgataatgaggagaatgcaaatgattcttctattccatgtagcatgaaattcagtgagac |
36545202 |
T |
|
| Q |
477 |
agtgtgtgcgtaacgttggatttgtaccaaaacattataacagcggtttcatttcatctcac |
538 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36545201 |
agtgtgtgcgtaacgttggatttgtaccaaaacattataacagcggtttcatttcatttcac |
36545140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University