View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0962_low_12 (Length: 525)

Name: NF0962_low_12
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0962_low_12
NF0962_low_12
[»] chr7 (17 HSPs)
chr7 (118-333)||(35119034-35119249)
chr7 (398-525)||(35119314-35119441)
chr7 (81-117)||(35118962-35118998)
chr7 (466-525)||(23552117-23552176)
chr7 (467-525)||(25021353-25021411)
chr7 (467-525)||(26459428-26459486)
chr7 (466-524)||(45709727-45709785)
chr7 (466-525)||(26526289-26526348)
chr7 (470-525)||(36803645-36803700)
chr7 (474-525)||(41519282-41519333)
chr7 (467-521)||(7801180-7801234)
chr7 (467-525)||(22760863-22760921)
chr7 (467-521)||(25956314-25956368)
chr7 (467-525)||(42836019-42836077)
chr7 (479-523)||(21877820-21877864)
chr7 (467-523)||(23301622-23301678)
chr7 (467-523)||(48771938-48771994)
[»] chr1 (15 HSPs)
chr1 (466-525)||(8177200-8177259)
chr1 (467-525)||(9165213-9165271)
chr1 (467-525)||(51703779-51703837)
chr1 (469-525)||(33700791-33700847)
chr1 (479-523)||(52336794-52336838)
chr1 (466-525)||(8904413-8904472)
chr1 (466-525)||(36371469-36371528)
chr1 (466-524)||(25297771-25297829)
chr1 (467-525)||(31794282-31794340)
chr1 (467-525)||(47753714-47753772)
chr1 (465-506)||(2074000-2074041)
chr1 (467-500)||(38978985-38979018)
chr1 (468-508)||(2069657-2069697)
chr1 (465-525)||(6122792-6122852)
chr1 (485-525)||(44046166-44046206)
[»] chr6 (6 HSPs)
chr6 (463-525)||(12188321-12188383)
chr6 (467-524)||(24641209-24641266)
chr6 (474-524)||(6776626-6776676)
chr6 (467-524)||(9433609-9433666)
chr6 (487-523)||(6385882-6385918)
chr6 (469-525)||(32613158-32613214)
[»] chr5 (9 HSPs)
chr5 (467-524)||(14495824-14495881)
chr5 (466-521)||(26598523-26598578)
chr5 (467-524)||(29075781-29075838)
chr5 (464-525)||(29692404-29692465)
chr5 (467-523)||(21549157-21549213)
chr5 (466-525)||(87441-87500)
chr5 (466-525)||(30883216-30883275)
chr5 (467-503)||(892514-892550)
chr5 (465-525)||(34984804-34984864)
[»] chr8 (14 HSPs)
chr8 (467-522)||(20994479-20994534)
chr8 (470-525)||(35690082-35690137)
chr8 (466-524)||(16852339-16852397)
chr8 (469-525)||(2203494-2203550)
chr8 (466-525)||(12988427-12988486)
chr8 (466-525)||(19703505-19703564)
chr8 (466-524)||(5264543-5264601)
chr8 (467-525)||(23361667-23361725)
chr8 (467-525)||(30483902-30483960)
chr8 (467-525)||(32157191-32157249)
chr8 (487-524)||(7140729-7140766)
chr8 (469-521)||(3624582-3624634)
chr8 (479-523)||(6569791-6569835)
chr8 (468-524)||(29858068-29858124)
[»] chr3 (16 HSPs)
chr3 (466-525)||(7975417-7975476)
chr3 (474-525)||(28928897-28928948)
chr3 (466-525)||(46518627-46518686)
chr3 (467-525)||(4222141-4222199)
chr3 (467-525)||(14339610-14339668)
chr3 (471-524)||(4844530-4844583)
chr3 (471-524)||(4870226-4870279)
chr3 (467-524)||(31788989-31789046)
chr3 (466-525)||(30311305-30311364)
chr3 (467-505)||(203090-203128)
chr3 (467-509)||(16991542-16991584)
chr3 (466-524)||(31520624-31520682)
chr3 (479-525)||(32651456-32651502)
chr3 (471-524)||(2667866-2667919)
chr3 (466-523)||(5499427-5499484)
chr3 (467-503)||(28562427-28562463)
[»] chr2 (14 HSPs)
chr2 (466-525)||(34041606-34041665)
chr2 (467-525)||(42327413-42327471)
chr2 (468-525)||(16918596-16918653)
chr2 (467-503)||(23922162-23922198)
chr2 (466-525)||(29503270-29503329)
chr2 (466-525)||(42602553-42602612)
chr2 (467-525)||(4438997-4439055)
chr2 (466-524)||(39714991-39715049)
chr2 (467-525)||(42922414-42922472)
chr2 (474-523)||(3001386-3001435)
chr2 (479-523)||(12994396-12994440)
chr2 (484-524)||(28846708-28846748)
chr2 (465-525)||(37480073-37480133)
chr2 (467-523)||(40416410-40416466)
[»] scaffold0070 (1 HSPs)
scaffold0070 (467-525)||(42538-42596)
[»] chr4 (6 HSPs)
chr4 (467-525)||(37109369-37109427)
chr4 (464-509)||(27965544-27965589)
chr4 (467-524)||(47044717-47044774)
chr4 (482-525)||(38869783-38869826)
chr4 (466-525)||(51250540-51250599)
chr4 (467-523)||(28635696-28635752)
[»] scaffold1367 (1 HSPs)
scaffold1367 (480-524)||(859-903)
[»] scaffold0299 (1 HSPs)
scaffold0299 (480-524)||(11541-11585)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 118 - 333
Target Start/End: Original strand, 35119034 - 35119249
Alignment:
Q  118 aatttatttgttcgatggtgcgcaccaccagcgttgtctagctacgtagtggagggtgggtttagatttgaaggaggtgagtaggagtagtggtggtgga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35119034 aatttatttgttcgatggtgcgcaccaccagcgttgtctagctacgtagtggagggtgggtttagatttgaaggaggtgagtaggagtagtggtggtgga 35119133  T
Q  218 cgatggaggggcggtagtatggaggggagggggtgatacgatgttgtttgttcagcccctcgagttggattcttttcacaattctttatttaaaataaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35119134 cgatggaggggcggtagtatggaggggagggggtgatacgatgttgtttgttcagcccctcgagttggattcttttcacaattctttatttaaaataaca 35119233  T
Q  318 tatagtaaaattaaga 333  Q
    ||||||||||||||||    
T  35119234 tatagtaaaattaaga 35119249  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 398 - 525
Target Start/End: Original strand, 35119314 - 35119441
Alignment:
Q  398 ctataaacttgcaagaaaaagattattaccatccaaatctattttgatcatttgaacttataagttacaaacccatttggattggcctagtggtattgac 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35119314 ctataaacttgcaagaaaaagattattaccatccaaatctattttgatcatttgaacttataagttacaaacccatttgggttggcctagtggtattgac 35119413  T
Q  498 ttgggatctgggtctgtgctcctcctca 525  Q
    ||||||||||||| | ||||| ||||||    
T  35119414 ttgggatctgggtgtatgctcatcctca 35119441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 35118962 - 35118998
Alignment:
Q  81 acctgtgtaacatgataaattagtttgtagataagtg 117  Q
    |||||||||||||||||||||||||||||||||||||    
T  35118962 acctgtgtaacatgataaattagtttgtagataagtg 35118998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 525
Target Start/End: Original strand, 23552117 - 23552176
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||| |||| ||||||||||| ||||||||||||| |||||  ||||||||||||||    
T  23552117 aaacccacttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctca 23552176  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 25021411 - 25021353
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| ||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  25021411 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctca 25021353  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 26459486 - 26459428
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| ||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  26459486 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctca 26459428  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 524
Target Start/End: Complemental strand, 45709785 - 45709727
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    |||||||||||| ||||||||||||||||  ||||||||||| |  |||||||||||||    
T  45709785 aaacccatttgggttggcctagtggtattagcttgggatctgagagtgtgctcctcctc 45709727  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Original strand, 26526289 - 26526348
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||||||||||||| || ||||||||||||| |||| || |  ||||||||||||||    
T  26526289 aaacccatttggattggtctggtggtattgacttaggatttgagagtgtgctcctcctca 26526348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 525
Target Start/End: Complemental strand, 36803700 - 36803645
Alignment:
Q  470 ccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||||| |||| |||||||||||||||||||| |||||  | ||||||||||||    
T  36803700 ccatttgggttggtctagtggtattgacttgggacctgggagtatgctcctcctca 36803645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 525
Target Start/End: Complemental strand, 41519333 - 41519282
Alignment:
Q  474 ttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||| |||||||||||||||||||||||||| | ||  ||||||||||||||    
T  41519333 ttgggttggcctagtggtattgacttgggatttaggagtgtgctcctcctca 41519282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 521
Target Start/End: Original strand, 7801180 - 7801234
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctc 521  Q
    |||||| |||| ||||||| ||||||||||||||||| |||||  ||||||||||    
T  7801180 aacccacttggtttggcctggtggtattgacttgggacctgggagtgtgctcctc 7801234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 22760863 - 22760921
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| |||| || ||||||||||||||||| |||||  ||||||||||||||    
T  22760863 aacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctca 22760921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 521
Target Start/End: Complemental strand, 25956368 - 25956314
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctc 521  Q
    ||||||||||| ||||||||||||||||| ||||||| || ||  ||||||||||    
T  25956368 aacccatttgggttggcctagtggtattggcttgggaccttggagtgtgctcctc 25956314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 42836077 - 42836019
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| ||||||||||||||||| ||||||| |||||  ||||||| ||||||    
T  42836077 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcttcctca 42836019  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 479 - 523
Target Start/End: Original strand, 21877820 - 21877864
Alignment:
Q  479 ttggcctagtggtattgacttgggatctgggtctgtgctcctcct 523  Q
    ||||||||||||||||||||||||| |||||   |||||||||||    
T  21877820 ttggcctagtggtattgacttgggacctgggagggtgctcctcct 21877864  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 523
Target Start/End: Complemental strand, 23301678 - 23301622
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcct 523  Q
    |||||| |||| ||||||| |||||||||||||||||  ||||  ||||||||||||    
T  23301678 aacccacttgggttggcctggtggtattgacttgggacttgggagtgtgctcctcct 23301622  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 523
Target Start/End: Original strand, 48771938 - 48771994
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcct 523  Q
    |||||| |||| ||||| | ||||||||| |||||||||||||  ||||||||||||    
T  48771938 aacccacttgggttggcttggtggtattggcttgggatctgggagtgtgctcctcct 48771994  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 525
Target Start/End: Complemental strand, 8177259 - 8177200
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||||||||  ||||||||||||||||| |||||||||||||  ||||||||||||||    
T  8177259 aaacccatttgagttggcctagtggtattggcttgggatctgggagtgtgctcctcctca 8177200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 9165271 - 9165213
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| ||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  9165271 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctca 9165213  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 51703779 - 51703837
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||||||| |||| |||||||||||| ||||| |||||||  ||||||||||||||    
T  51703779 aacccatttgggttggtctagtggtattggcttggaatctgggagtgtgctcctcctca 51703837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 33700847 - 33700791
Alignment:
Q  469 cccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||| |||| ||||||||||||||||| ||||| |||||||  ||||||||||||||    
T  33700847 cccacttgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctca 33700791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 523
Target Start/End: Complemental strand, 52336838 - 52336794
Alignment:
Q  479 ttggcctagtggtattgacttgggatctgggtctgtgctcctcct 523  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||    
T  52336838 ttggcctagtggtattggcttgggatctgggagtgtgctcctcct 52336794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Original strand, 8904413 - 8904472
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||| |||| |||||||||| ||||||||||||||| || |  ||||||||||||||    
T  8904413 aaacccacttgggttggcctagtagtattgacttgggatatgtgagtgtgctcctcctca 8904472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Original strand, 36371469 - 36371528
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||| |||| ||||||||||||||||| ||||| | |||||  ||||||||||||||    
T  36371469 aaacccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctca 36371528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 524
Target Start/End: Original strand, 25297771 - 25297829
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    ||||||| |||| |||| |||||||||||||||| ||||||| |  |||||||||||||    
T  25297771 aaacccacttgggttggtctagtggtattgacttaggatctgagagtgtgctcctcctc 25297829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 31794340 - 31794282
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| ||||||||||||||||| |||||||  ||||  ||||||||||||||    
T  31794340 aacccacttgggttggcctagtggtattggcttgggacttgggagtgtgctcctcctca 31794282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 47753714 - 47753772
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||||| | ||| ||| || ||||||||||||||||| || |||||||||||||||    
T  47753714 aacccatttaggttgacctggtcgtattgacttgggatctaggactgtgctcctcctca 47753772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 506
Target Start/End: Original strand, 2074000 - 2074041
Alignment:
Q  465 caaacccatttggattggcctagtggtattgacttgggatct 506  Q
    ||||||||||||| ||||||| || |||||||||||||||||    
T  2074000 caaacccatttgggttggcctggttgtattgacttgggatct 2074041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 500
Target Start/End: Complemental strand, 38979018 - 38978985
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttg 500  Q
    ||||||||||| ||||||||||||||||||||||    
T  38979018 aacccatttgggttggcctagtggtattgacttg 38978985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 508
Target Start/End: Original strand, 2069657 - 2069697
Alignment:
Q  468 acccatttggattggcctagtggtattgacttgggatctgg 508  Q
    |||||||||| ||||||| || |||||||||||||||||||    
T  2069657 acccatttgggttggcctggttgtattgacttgggatctgg 2069697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 525
Target Start/End: Original strand, 6122792 - 6122852
Alignment:
Q  465 caaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||||||||| ||| ||||||||||| | |||||||  ||||  ||||||||||||||    
T  6122792 caaacccatttgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctca 6122852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 485 - 525
Target Start/End: Complemental strand, 44046206 - 44046166
Alignment:
Q  485 tagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||||||| |||||||||||||  ||||||||||||||    
T  44046206 tagtggtattggcttgggatctgggagtgtgctcctcctca 44046166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 463 - 525
Target Start/End: Complemental strand, 12188383 - 12188321
Alignment:
Q  463 tacaaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||||||| |||| ||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  12188383 tacaaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctca 12188321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 24641266 - 24641209
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    ||||||||||| ||||| | |||||||||||||||||||||||  |||||||||||||    
T  24641266 aacccatttgggttggcttggtggtattgacttgggatctgggagtgtgctcctcctc 24641209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 524
Target Start/End: Complemental strand, 6776676 - 6776626
Alignment:
Q  474 ttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    |||| ||||||| ||||||||| |||||||||||||  |||||||||||||    
T  6776676 ttgggttggcctggtggtattggcttgggatctgggggtgtgctcctcctc 6776626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 9433666 - 9433609
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    |||||| |||||||| ||  |||||||||||||||||||||||  ||||||| |||||    
T  9433666 aacccacttggattgaccctgtggtattgacttgggatctgggagtgtgctcttcctc 9433609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 487 - 523
Target Start/End: Original strand, 6385882 - 6385918
Alignment:
Q  487 gtggtattgacttgggatctgggtctgtgctcctcct 523  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  6385882 gtggtattgacttgggacctgggactgtgctcctcct 6385918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 32613214 - 32613158
Alignment:
Q  469 cccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||| |||| ||||||| |||||||||||||||| ||||||  ||||||||| ||||    
T  32613214 cccacttgggttggcctggtggtattgacttggggtctgggagtgtgctccttctca 32613158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 14495881 - 14495824
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    ||||||||||| |||| || |||||||||||||||||||||||  |||||||||||||    
T  14495881 aacccatttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctc 14495824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 26598523 - 26598578
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctc 521  Q
    ||||||| |||||||||||||||||||||| ||||||||||| |  ||||||||||    
T  26598523 aaacccacttggattggcctagtggtattggcttgggatctgagagtgtgctcctc 26598578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 524
Target Start/End: Original strand, 29075781 - 29075838
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    |||||| |||| || |||||||||||||| |||||||||||||  |||||||||||||    
T  29075781 aacccacttgggtttgcctagtggtattggcttgggatctgggagtgtgctcctcctc 29075838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 525
Target Start/End: Complemental strand, 29692465 - 29692404
Alignment:
Q  464 acaaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||||||||||| |||| || |||||||||  ||||||||||||  ||||||||||||||    
T  29692465 acaaacccatttgggttggtctggtggtattggattgggatctgggagtgtgctcctcctca 29692404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 523
Target Start/End: Complemental strand, 21549213 - 21549157
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcct 523  Q
    |||||| |||| ||||||||||||||||| ||||||| |||||  ||||||||||||    
T  21549213 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcct 21549157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Complemental strand, 87500 - 87441
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||| || | ||||||||||||||||| ||||| |||||||  ||||||||||||||    
T  87500 aaacccacttcggttggcctagtggtattgccttggaatctgggagtgtgctcctcctca 87441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Complemental strand, 30883275 - 30883216
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||| |||| |||| |||||||||||| ||||||| |||||  ||||||||||||||    
T  30883275 aaacccacttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctca 30883216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 503
Target Start/End: Complemental strand, 892550 - 892514
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttggga 503  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  892550 aacccatttgggttggcctagtggtattggcttggga 892514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 525
Target Start/End: Original strand, 34984804 - 34984864
Alignment:
Q  465 caaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||||| |||| |||| |||||||||||| ||||| | |||||  ||||||||||||||    
T  34984804 caaacccacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctca 34984864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 522
Target Start/End: Complemental strand, 20994534 - 20994479
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcc 522  Q
    |||||| |||| ||||||||||||||||||||||||| |||||  |||||||||||    
T  20994534 aacccacttgggttggcctagtggtattgacttgggacctgggagtgtgctcctcc 20994479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 525
Target Start/End: Complemental strand, 35690137 - 35690082
Alignment:
Q  470 ccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||||  ||||||||||||||||| |||||||||||||| | ||||||||||||    
T  35690137 ccatttgtgttggcctagtggtattggcttgggatctgggtgtttgctcctcctca 35690082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 524
Target Start/End: Original strand, 16852339 - 16852397
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    ||||||| |||| ||||||||||||||||| ||||||| |||||  |||||||||||||    
T  16852339 aaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 16852397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 2203494 - 2203550
Alignment:
Q  469 cccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||| |||| ||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  2203494 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctca 2203550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Original strand, 12988427 - 12988486
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||| |||||||||||||||||||||| ||||| | ||||   ||||||||||||||    
T  12988427 aaacccacttggattggcctagtggtattggcttggaacctggaagtgtgctcctcctca 12988486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Complemental strand, 19703564 - 19703505
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||| |||| ||||||||||||||||| ||||||| ||| |  ||||||||||||||    
T  19703564 aaacccacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctca 19703505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 524
Target Start/End: Original strand, 5264543 - 5264601
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    ||||||| |||| ||||||||||||||||| ||||| | |||||  |||||||||||||    
T  5264543 aaacccacttgggttggcctagtggtattggcttggaacctgggaatgtgctcctcctc 5264601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 23361725 - 23361667
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| ||| ||| |||||||||||||||||| ||||  ||||||||||||||    
T  23361725 aacccacttgggttgacctggtggtattgacttgggatatgggagtgtgctcctcctca 23361667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 30483960 - 30483902
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| |||||| |||||||||| |||||||| ||||  ||||||||||||||    
T  30483960 aacccacttgggttggcccagtggtattggcttgggatatgggagtgtgctcctcctca 30483902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 32157191 - 32157249
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||||||| ||||||| ||||||||||||||||| || ||  | ||||||||||||    
T  32157191 aacccatttgggttggcctggtggtattgacttgggaccttggagtatgctcctcctca 32157249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 524
Target Start/End: Original strand, 7140729 - 7140766
Alignment:
Q  487 gtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  7140729 gtggtattggcttgggatctgggtgtgtgctcctcctc 7140766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 521
Target Start/End: Original strand, 3624582 - 3624634
Alignment:
Q  469 cccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctc 521  Q
    |||| |||| ||||||||||||||||| ||||||| |||||  ||||||||||    
T  3624582 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctc 3624634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 479 - 523
Target Start/End: Complemental strand, 6569835 - 6569791
Alignment:
Q  479 ttggcctagtggtattgacttgggatctgggtctgtgctcctcct 523  Q
    ||||||||||| ||||| |||||||||||||  ||||||||||||    
T  6569835 ttggcctagtgatattggcttgggatctgggagtgtgctcctcct 6569791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 468 - 524
Target Start/End: Complemental strand, 29858124 - 29858068
Alignment:
Q  468 acccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    ||||| |||||||||||| ||||||||| ||||||| | |||  |||||||||||||    
T  29858124 acccacttggattggcctggtggtattggcttgggaccagggagtgtgctcctcctc 29858068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 525
Target Start/End: Original strand, 7975417 - 7975476
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||||||| | ||||||||||||||| | |||||||||||||  ||||||||||||||    
T  7975417 aaacccatttaggttggcctagtggtataggcttgggatctgggagtgtgctcctcctca 7975476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 525
Target Start/End: Complemental strand, 28928948 - 28928897
Alignment:
Q  474 ttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||||||||||||||||||| ||||||||||| |  ||||||||||||||    
T  28928948 ttggattggcctagtggtattggcttgggatctgagagtgtgctcctcctca 28928897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 525
Target Start/End: Original strand, 46518627 - 46518686
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||| |||| ||||| ||||||||||| |||||||||||||  ||||||||||||||    
T  46518627 aaacccacttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctca 46518686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 4222141 - 4222199
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| ||||| ||||||||||| |||||||||||||  ||||||||||||||    
T  4222141 aacccacttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctca 4222199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 14339610 - 14339668
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||||||||||| ||||||||| |||||||| ||||  ||||||||||||||    
T  14339610 aacccagttggattggcctggtggtattggcttgggatttgggagtgtgctcctcctca 14339668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 471 - 524
Target Start/End: Complemental strand, 4844583 - 4844530
Alignment:
Q  471 catttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    ||||||| |||| || |||||||||||||||||||||||  |||||||||||||    
T  4844583 catttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctc 4844530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 471 - 524
Target Start/End: Complemental strand, 4870279 - 4870226
Alignment:
Q  471 catttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    ||||||| |||| || |||||||||||||||||||||||  |||||||||||||    
T  4870279 catttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctc 4870226  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 31789046 - 31788989
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    |||||| |||| ||||||||||| ||||| |||||||||||||  |||||||||||||    
T  31789046 aacccacttgggttggcctagtgttattggcttgggatctgggagtgtgctcctcctc 31788989  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Original strand, 30311305 - 30311364
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||||  ||| ||||||||||||||| | |||||||||||||  ||||||||||||||    
T  30311305 aaacccacctgggttggcctagtggtataggcttgggatctgggagtgtgctcctcctca 30311364  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 505
Target Start/End: Original strand, 203090 - 203128
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatc 505  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  203090 aacccacttgggttggcctagtggtattgacttgggatc 203128  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 509
Target Start/End: Original strand, 16991542 - 16991584
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctggg 509  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||    
T  16991542 aacccatttgggttggcctggtggtattggcttgggatctggg 16991584  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 524
Target Start/End: Complemental strand, 31520682 - 31520624
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    ||||||| |||| ||||||| |||| |||| |||||||||||||  |||||||||||||    
T  31520682 aaacccacttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctc 31520624  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 525
Target Start/End: Complemental strand, 32651502 - 32651456
Alignment:
Q  479 ttggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  32651502 ttggcctagtggtattggcttgggacctgggagtgtgctcctcctca 32651456  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 524
Target Start/End: Original strand, 2667866 - 2667919
Alignment:
Q  471 catttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    ||||||| ||||||| ||||||||| |||||||||||||  ||||||| |||||    
T  2667866 catttgggttggcctggtggtattggcttgggatctgggagtgtgctcttcctc 2667919  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 523
Target Start/End: Complemental strand, 5499484 - 5499427
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcct 523  Q
    ||||||| |||| ||||||| |||||||||||||| |||||| |  ||||||||||||    
T  5499484 aaacccacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctcct 5499427  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 503
Target Start/End: Original strand, 28562427 - 28562463
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttggga 503  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  28562427 aacccctttggagtggcctagtggtattgacttggga 28562463  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 525
Target Start/End: Complemental strand, 34041665 - 34041606
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||| |||| ||||||||||||||||||||| ||||||| |  ||||||||||||||    
T  34041665 aaacccacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctca 34041606  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 42327471 - 42327413
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| ||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  42327471 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctca 42327413  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 468 - 525
Target Start/End: Complemental strand, 16918653 - 16918596
Alignment:
Q  468 acccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||| |||| |||||||||||||||||  ||||||||||||  ||||||||||||||    
T  16918653 acccacttgggttggcctagtggtattggtttgggatctgggagtgtgctcctcctca 16918596  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 503
Target Start/End: Complemental strand, 23922198 - 23922162
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttggga 503  Q
    ||||||||||||||| |||||||||||||||||||||    
T  23922198 aacccatttggattgacctagtggtattgacttggga 23922162  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Original strand, 29503270 - 29503329
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||| |||| |||||||||||||||||  |||||| |||||  ||||||||||||||    
T  29503270 aaacccacttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcctca 29503329  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Original strand, 42602553 - 42602612
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||| |||| ||||||||||||||||| ||||||| |||||  ||||||||| ||||    
T  42602553 aaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctccttctca 42602612  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 4439055 - 4438997
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| |||||||| ||||||| |||||||||||| |  ||||||||||||||    
T  4439055 aacccacttgggttggcctaatggtattaacttgggatctgagagtgtgctcctcctca 4438997  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 524
Target Start/End: Original strand, 39714991 - 39715049
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    ||||||| |||| ||||| | ||||||||||||||||| |||||  |||||||||||||    
T  39714991 aaacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctc 39715049  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 42922414 - 42922472
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| ||||||||||||||||| ||||| | |||||  ||||||||||||||    
T  42922414 aacccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctca 42922472  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 523
Target Start/End: Original strand, 3001386 - 3001435
Alignment:
Q  474 ttggattggcctagtggtattgacttgggatctgggtctgtgctcctcct 523  Q
    |||| |||||||||||||||||||||| ||||| ||  ||||||||||||    
T  3001386 ttgggttggcctagtggtattgacttgagatctaggagtgtgctcctcct 3001435  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 479 - 523
Target Start/End: Complemental strand, 12994440 - 12994396
Alignment:
Q  479 ttggcctagtggtattgacttgggatctgggtctgtgctcctcct 523  Q
    |||| |||||||||||||||||||| |||||  ||||||||||||    
T  12994440 ttggtctagtggtattgacttgggacctgggagtgtgctcctcct 12994396  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 484 - 524
Target Start/End: Original strand, 28846708 - 28846748
Alignment:
Q  484 ctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    |||||||||||||||||||| |||||  |||||||||||||    
T  28846708 ctagtggtattgacttgggacctgggagtgtgctcctcctc 28846748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 525
Target Start/End: Original strand, 37480073 - 37480133
Alignment:
Q  465 caaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||||| |||| ||||||| ||||||||| ||||||| ||| |  ||||||||||||||    
T  37480073 caaacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctca 37480133  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 523
Target Start/End: Complemental strand, 40416466 - 40416410
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcct 523  Q
    |||||| |||| ||||||||||||||||||||||| | |||||  | ||||||||||    
T  40416466 aacccacttgggttggcctagtggtattgacttggaacctgggagtatgctcctcct 40416410  T

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Target: scaffold0070 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 42596 - 42538
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| ||||||||||||||||||||||| |||||||  | ||||||||||||    
T  42596 aacccagttgggttggcctagtggtattgacttggaatctgggagtatgctcctcctca 42538  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 37109427 - 37109369
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||| |||| ||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  37109427 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctca 37109369  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 509
Target Start/End: Complemental strand, 27965589 - 27965544
Alignment:
Q  464 acaaacccatttggattggcctagtggtattgacttgggatctggg 509  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||||    
T  27965589 acaaacccacttgggttggcctagtggtattggcttgggatctggg 27965544  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 524
Target Start/End: Original strand, 47044717 - 47044774
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    |||||| |||||||||||| ||||||||||||||||||||| |  | |||||||||||    
T  47044717 aacccacttggattggcctggtggtattgacttgggatctgagagtttgctcctcctc 47044774  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Original strand, 38869783 - 38869826
Alignment:
Q  482 gcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    |||||||||||||| |||||||||||||  ||||||||||||||    
T  38869783 gcctagtggtattggcttgggatctgggagtgtgctcctcctca 38869826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Complemental strand, 51250599 - 51250540
Alignment:
Q  466 aaacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcctca 525  Q
    ||||||| |||| ||||||| ||||||||| |||||||||||||  |||||||| |||||    
T  51250599 aaacccacttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctca 51250540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 523
Target Start/End: Original strand, 28635696 - 28635752
Alignment:
Q  467 aacccatttggattggcctagtggtattgacttgggatctgggtctgtgctcctcct 523  Q
    |||||| |||| ||| ||| |||||| ||||||||||||||||  ||||||||||||    
T  28635696 aacccacttgggttgtcctggtggtactgacttgggatctgggagtgtgctcctcct 28635752  T

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Target: scaffold1367 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 480 - 524
Target Start/End: Complemental strand, 903 - 859
Alignment:
Q  480 tggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    |||||| ||||||||| |||||||||||||  |||||||||||||    
T  903 tggcctggtggtattggcttgggatctgggaatgtgctcctcctc 859  T

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Target: scaffold0299 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 480 - 524
Target Start/End: Original strand, 11541 - 11585
Alignment:
Q  480 tggcctagtggtattgacttgggatctgggtctgtgctcctcctc 524  Q
    |||||| ||||||||| |||||||||||||  |||||||||||||    
T  11541 tggcctggtggtattggcttgggatctgggagtgtgctcctcctc 11585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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