View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0962_low_15 (Length: 479)

Name: NF0962_low_15
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0962_low_15
NF0962_low_15
[»] scaffold1041 (1 HSPs)
scaffold1041 (94-300)||(821-1027)
[»] chr8 (11 HSPs)
chr8 (94-298)||(25391717-25391921)
chr8 (94-300)||(25617587-25617801)
chr8 (94-251)||(25494810-25494967)
chr8 (94-164)||(25678316-25678386)
chr8 (94-156)||(25358685-25358747)
chr8 (363-415)||(25617849-25617900)
chr8 (363-410)||(25391951-25391997)
chr8 (428-466)||(25358998-25359036)
chr8 (428-466)||(25618042-25618080)
chr8 (363-404)||(25650504-25650544)
chr8 (272-300)||(25650413-25650441)
[»] scaffold0466 (4 HSPs)
scaffold0466 (94-242)||(7955-8103)
scaffold0466 (240-300)||(7870-7930)
scaffold0466 (363-419)||(7752-7807)
scaffold0466 (430-466)||(6384-6420)


Alignment Details
Target: scaffold1041 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 94 - 300
Target Start/End: Complemental strand, 1027 - 821
Alignment:
Q  94 catatgaggagctctcaactcatgtttttcaacttgtgagagtactattcttatggtaatttgatgagcgacttgcgaaaaatactatatttcaatcaat 193  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  1027 catatgaggagctctcaactcgtgtttttcaactcgtgagagtactattcttacggtattttgatgagcgacttgcgaaaaatactatatttcaatcaat 928  T
Q  194 cttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagacattggtagccttatgcttttttagaagggtgtcgagt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  927 cttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagacattggtagccttatgcttttttagaagggtgtcgagt 828  T
Q  294 ttatgtg 300  Q
    |||||||    
T  827 ttatgtg 821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 94 - 298
Target Start/End: Original strand, 25391717 - 25391921
Alignment:
Q  94 catatgaggagctctcaactcatgtttttcaacttgtgagagtactattcttatggtaatttgatgagcgacttgcgaaaaatactatatttcaatcaat 193  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||    
T  25391717 catatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttgatgagagacttgcgaaaaatactatatttcaatcaat 25391816  T
Q  194 cttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagacattggtagccttatgcttttttagaagggtgtcgagt 293  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25391817 ctttcaagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagacattggtagccttatgcttttttagaagggtgtcgagt 25391916  T
Q  294 ttatg 298  Q
    |||||    
T  25391917 ttatg 25391921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 94 - 300
Target Start/End: Original strand, 25617587 - 25617801
Alignment:
Q  94 catatgaggagctctcaactcatgtttttcaacttgtgagagtactattcttatggtaa-tttgatgagcgacttgcgaaaaatactatatttcaatcaa 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  25617587 catatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtaaatttgatgagcgacttgcaaaaaatactatatttcaatcaa 25617686  T
Q  193 tcttttca-------gtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagacattggtagccttatgcttttttagaaggg 285  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25617687 tcttttcagacttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagaaattggtagccttatgcttttttagaaggg 25617786  T
Q  286 tgtcgagtttatgtg 300  Q
    |||||||||||||||    
T  25617787 tgtcgagtttatgtg 25617801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 94 - 251
Target Start/End: Original strand, 25494810 - 25494967
Alignment:
Q  94 catatgaggagctctcaactcatgtttttcaacttgtgagagtactattcttatggtaatttgatgagcgacttgcgaaaaatactatatttcaatcaat 193  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25494810 catatgaggagctctcaactcatgtttttcaatttgtgagattactattcttatggtaatttgatgagcgacttgcgaaaaatactaaatttcaatcaat 25494909  T
Q  194 cttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494910 cttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttc 25494967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 25678316 - 25678386
Alignment:
Q  94 catatgaggagctctcaactcatgtttttcaacttgtgagagtactattcttatggtaatttgatgagcga 164  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  25678316 catatgaggagctctcaactcatgtttttcaacttgtgaaagtactattcttacggtaatttgatgagcga 25678386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 25358685 - 25358747
Alignment:
Q  94 catatgaggagctctcaactcatgtttttcaacttgtgagagtactattcttatggtaatttg 156  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||    
T  25358685 catatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttg 25358747  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 25617849 - 25617900
Alignment:
Q  363 gtagctgcttctaagttgtgtgtatgcataatttgaagagagacataataatg 415  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25617849 gtagctgcttctaagtt-tgtgtatgcataatttgaagagagacataataatg 25617900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 25391951 - 25391997
Alignment:
Q  363 gtagctgcttctaagttgtgtgtatgcataatttgaagagagacataa 410  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  25391951 gtagctgcttctaagtt-tgtgtatgcataatttgaaaagagacataa 25391997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 466
Target Start/End: Original strand, 25358998 - 25359036
Alignment:
Q  428 aagttgaatttctatctcttgtcgtcaagtttggctttc 466  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  25358998 aagttgaatttctagctcttgtcgtcaagtttggctttc 25359036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 466
Target Start/End: Original strand, 25618042 - 25618080
Alignment:
Q  428 aagttgaatttctatctcttgtcgtcaagtttggctttc 466  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  25618042 aagttgaatttctagctcttgtcgtcaagtttggctttc 25618080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 25650504 - 25650544
Alignment:
Q  363 gtagctgcttctaagttgtgtgtatgcataatttgaagagag 404  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  25650504 gtagctgcttctaagtt-tgtgtatgcataatttgaagagag 25650544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 300
Target Start/End: Original strand, 25650413 - 25650441
Alignment:
Q  272 cttttttagaagggtgtcgagtttatgtg 300  Q
    |||||||||||||||||||||||||||||    
T  25650413 cttttttagaagggtgtcgagtttatgtg 25650441  T

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Target: scaffold0466 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 94 - 242
Target Start/End: Complemental strand, 8103 - 7955
Alignment:
Q  94 catatgaggagctctcaactcatgtttttcaacttgtgagagtactattcttatggtaatttgatgagcgacttgcgaaaaatactatatttcaatcaat 193  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  8103 catatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttatggtattttgatgagtgacttgcgaaaaatactatatttcaatcaat 8004  T
Q  194 cttttcagtgtagccttttgcaactattctttccttgtgtccttcattg 242  Q
     |||||||  |||||||||||||||||||||||||||||||||||||||    
T  8003 attttcagcttagccttttgcaactattctttccttgtgtccttcattg 7955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 7930 - 7870
Alignment:
Q  240 ttgcacactttctagacattggtagccttatgcttttttagaagggtgtcgagtttatgtg 300  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7930 ttgcacactttctagacattggtagccttaggcttttttagaagggtgtcgagtttatgtg 7870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 7807 - 7752
Alignment:
Q  363 gtagctgcttctaagttgtgtgtatgcataatttgaagagagacataataatgtgga 419  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7807 gtagctgcttctaagtt-tgtgtatgcataatttgaagagagacataataatgtgga 7752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 466
Target Start/End: Complemental strand, 6420 - 6384
Alignment:
Q  430 gttgaatttctatctcttgtcgtcaagtttggctttc 466  Q
    |||||||||||| ||||||||||||||||||||||||    
T  6420 gttgaatttctagctcttgtcgtcaagtttggctttc 6384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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