View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_17 (Length: 472)
Name: NF0962_low_17
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 191 - 472
Target Start/End: Complemental strand, 38028251 - 38027970
Alignment:
| Q |
191 |
gtttttgttcctcccctttactcagcaaagaagtttggagtcacagactttgtaaatcctggagaattggaaaacaaatctgtgagtcaggttatcatag |
290 |
Q |
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| T |
38028251 |
gtttttgttccccccctttactcagcaaagaagtttggagtcacagactttgtaaatcctggagaattggaaaacaaatctgtgagtcaggttatcatag |
38028152 |
T |
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| Q |
291 |
agatgactggtgggggagcagattattgctttgaatgtgttggtatggcatcattggtgcatgaagcatatgcttcatgtagaaaggtctatttctatat |
390 |
Q |
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| T |
38028151 |
agatgactggtgggggagcagattattgctttgaatgtgttggtatggcatcattggtgcatgaagcatatgcttcatgtagaaaggtctatttctatat |
38028052 |
T |
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| Q |
391 |
caaagtgtgcattattttcatttgtaccaactaatttttgttttattttaatcatattattggtgcaaagtacttccaacta |
472 |
Q |
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| T |
38028051 |
caaagtgtgcattgttttcatttgtaccaactaatttttgttttattttaaccatattattggtgcaaagtacttccaacta |
38027970 |
T |
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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 282 - 378
Target Start/End: Original strand, 35611449 - 35611545
Alignment:
| Q |
282 |
ttatcatagagatgactggtgggggagcagattattgctttgaatgtgttggtatggcatcattggtgcatgaagcatatgcttcatgtagaaaggt |
378 |
Q |
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| T |
35611449 |
ttatcatagagatgactgatggaggagcagattattgttttgaatgtgtcggtatggcatcattggtgcatgaagcatatgcttcttgtagaaaggt |
35611545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 378
Target Start/End: Original strand, 35615792 - 35615891
Alignment:
| Q |
279 |
aggttatcatagagatgactggtgggggagcagattattgctttgaatgtgttggtatggcatcattggtgcatgaagcatatgcttcatgtagaaaggt |
378 |
Q |
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| T |
35615792 |
aggtcatcacagagatgactgatgggggagcagattattgctttgagtgtgtcggtatggcatcattggtgcaagacgcgtatgcttcttgcagaaaggt |
35615891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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