View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0962_low_20 (Length: 469)

Name: NF0962_low_20
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0962_low_20
NF0962_low_20
[»] chr3 (9 HSPs)
chr3 (30-461)||(24930345-24930776)
chr3 (286-461)||(24976357-24976532)
chr3 (100-226)||(24976190-24976316)
chr3 (298-398)||(24991109-24991209)
chr3 (298-398)||(25014646-25014746)
chr3 (298-398)||(25013525-25013625)
chr3 (298-368)||(21794625-21794695)
chr3 (309-371)||(25027510-25027572)
chr3 (286-319)||(42028831-42028864)
[»] scaffold0777 (3 HSPs)
scaffold0777 (285-461)||(1411-1587)
scaffold0777 (137-285)||(1214-1364)
scaffold0777 (55-96)||(705-746)
[»] chr5 (2 HSPs)
chr5 (111-202)||(4943868-4943959)
chr5 (328-395)||(26104443-26104510)
[»] chr4 (1 HSPs)
chr4 (286-320)||(21261462-21261496)
[»] chr2 (1 HSPs)
chr2 (286-319)||(28219574-28219607)


Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 30 - 461
Target Start/End: Complemental strand, 24930776 - 24930345
Alignment:
Q  30 gtataaatgtatgaaacagagttggtgtatgaatgattggaaataacaaaattgacaacgtaaaaacaaaaagagttacccctaaaatagtggaatcaaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24930776 gtataaatgtatgaaacagagttggtgtatgaatgattggaaataacaaaattgacaacgtgaaaacaaaaagagttacccctaaaatagtggaatcaaa 24930677  T
Q  130 aatgttttctctttttgcataaatgcccatgcttccatttcttcccacaaaggtagcagaagttgcatttacacctgagaaaaattgagctagtattgtt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24930676 aatgttttctctttttgcataaatgcccatgcttccatttcttcccacagaggtagcagaagttgcatttacacctgagaaaaattgagctagtattgtt 24930577  T
Q  230 agtctcttttatcatatgatgtaataatgaatcacatgttaaatgagttagggttagaatacaaaacaaacctgcatttcatgtgttcacatccactact 329  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24930576 agtctcttttatcatatgatgtaataatgaatcacatgttgaatgagttagggttagaatacaaaacaaacctgcatttcatgtgttcacatccactact 24930477  T
Q  330 tctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaacttatcatccaaatctatttcatttttatcgcgt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24930476 tctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaacttatcatccaaatctatttcatttttatcgcgt 24930377  T
Q  430 ttcaaatcttgaaactcctgacaattcatctc 461  Q
    ||||||||||||||||||||||||||||||||    
T  24930376 ttcaaatcttgaaactcctgacaattcatctc 24930345  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 286 - 461
Target Start/End: Original strand, 24976357 - 24976532
Alignment:
Q  286 gaatacaaaacaaacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagcta 385  Q
    |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||| ||| || ||| | ||||| |    
T  24976357 gaatacaaaataaacctgcatttcatgtgttcacatccatcacttctcttgacatagatagagcaatttgggcatctctgccacttctttctgttagcca 24976456  T
Q  386 actccaaaaacttatcatccaaatctatttcatttttatcgcgtttcaaatcttgaaactcctgacaattcatctc 461  Q
    |||||||||| |||||||||||||||  ||| ||||||   |||||||||||||||||||||||||||||||||||    
T  24976457 actccaaaaatttatcatccaaatcttgttcctttttaggacgtttcaaatcttgaaactcctgacaattcatctc 24976532  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 24976190 - 24976316
Alignment:
Q  100 aagagttacccctaaaatagtggaatcaaaaatgttttctctttttgcataaatgcccatgcttccatttcttcccacaaaggtagcagaagttgcattt 199  Q
    |||||||||| ||||||||| |||||||  ||| ||||||||| | ||||||||||||||||||||||| || ||||||| ||||||||||||| |||||    
T  24976190 aagagttacctctaaaataggggaatcatcaatattttctcttctcgcataaatgcccatgcttccattcctccccacaatggtagcagaagttacattt 24976289  T
Q  200 acacctgagaaaaattgagctagtatt 226  Q
    |||||||| |||||| |||||||||||    
T  24976290 acacctgaaaaaaatggagctagtatt 24976316  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 398
Target Start/End: Complemental strand, 24991209 - 24991109
Alignment:
Q  298 aacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaact 397  Q
    ||||||||| ||||||||||||||||| || ||||||  ||||  ||||| || ||||||||||||||||| || | | ||||||| |||||||||||||    
T  24991209 aacctgcatctcatgtgttcacatccagtagttctctgtacatgcatagaacattttggacatctcttccacttttctcttttagccaactccaaaaact 24991110  T
Q  398 t 398  Q
    |    
T  24991109 t 24991109  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 398
Target Start/End: Complemental strand, 25014746 - 25014646
Alignment:
Q  298 aacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaact 397  Q
    ||||||||| ||||||||||||||||| || ||||||  ||||  ||||| || ||||||||||||||||| || | | ||||||| |||||||||||||    
T  25014746 aacctgcatctcatgtgttcacatccagtagttctctgtacatgcatagaacattttggacatctcttccacttttctcttttagccaactccaaaaact 25014647  T
Q  398 t 398  Q
    |    
T  25014646 t 25014646  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 398
Target Start/End: Complemental strand, 25013625 - 25013525
Alignment:
Q  298 aacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaact 397  Q
    ||||||||| ||||||||||||||||| || ||||||  ||||  ||||| || ||||||||||| ||||| || | | ||||||| |||||||||||||    
T  25013625 aacctgcatctcatgtgttcacatccagtagttctctgtacatgcatagaacattttggacatcttttccacttttctcttttagccaactccaaaaact 25013526  T
Q  398 t 398  Q
    |    
T  25013525 t 25013525  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 21794625 - 21794695
Alignment:
Q  298 aacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttcca 368  Q
    ||||||||  ||||||| | ||||||| || |||||| |||||||||||||||| |||||||||| |||||    
T  21794625 aacctgcacatcatgtgattacatccattaattctctcgacatagatagagcaacttggacatcttttcca 21794695  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 371
Target Start/End: Complemental strand, 25027572 - 25027510
Alignment:
Q  309 catgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccattt 371  Q
    ||||||||||||||||| | |||||| |||||  |||||||| || |||||||||| ||||||    
T  25027572 catgtgttcacatccaccatttctctggacatgcatagagcatttgggacatctctgccattt 25027510  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 42028864 - 42028831
Alignment:
Q  286 gaatacaaaacaaacctgcatttcatgtgttcac 319  Q
    |||||||||| |||||||||||||||||||||||    
T  42028864 gaatacaaaataaacctgcatttcatgtgttcac 42028831  T

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Target: scaffold0777 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 285 - 461
Target Start/End: Original strand, 1411 - 1587
Alignment:
Q  285 agaatacaaaacaaacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagct 384  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||    
T  1411 agaatacaaaacaaacctgcatttcatgtgttcacatccactccttctcttgacatagatagagcaatttggacatctctgccacttgtttcttttagct 1510  T
Q  385 aactccaaaaacttatcatccaaatctatttcatttttatcgcgtttcaaatcttgaaactcctgacaattcatctc 461  Q
    |||| ||||||||||||||||||||||| ||||||| ||| | |||||||||||||||| |||||||| ||||||||    
T  1511 aacttcaaaaacttatcatccaaatctacttcatttgtattgtgtttcaaatcttgaaattcctgacagttcatctc 1587  T

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Target: scaffold0777; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 137 - 285
Target Start/End: Original strand, 1214 - 1364
Alignment:
Q  137 tctctttttgcataaatgcccatgcttccatttcttcccacaaaggtagcagaagttgcatttacacctgagaaaaa-ttgagctagtattgttag-tct 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||| | |    
T  1214 tctctttttgcataaatgcccatgcttccatttcttcccacaaaggtagcagaagttgcatttacacctaaaaaaaatttgagctaatattgttagttat 1313  T
Q  235 cttttatcatatgatgtaataatgaatcacatgttaaatgagttagggtta 285  Q
     |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  1314 tttttatcatatgatgtaataatgaatcacatgttaaatgattaagggtta 1364  T

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Target: scaffold0777; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 705 - 746
Alignment:
Q  55 tgtatgaatgattggaaataacaaaattgacaacgtaaaaac 96  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  705 tgtatgaatgattggaaataacaaaattgacaacgtcaaaac 746  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 4943868 - 4943959
Alignment:
Q  111 ctaaaatagtggaatcaaaaatgttttctctttttgcataaatgcccatgcttccatttcttcccacaaaggtagcagaagttgcatttaca 202  Q
    ||||||||| |||||||  ||| |||||||| ||||||||||||| |||||||||||||||| |||||  ||||||||||||| ||||||||    
T  4943868 ctaaaataggggaatcatcaatattttctctctttgcataaatgctcatgcttccatttctttccacattggtagcagaagttacatttaca 4943959  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 26104510 - 26104443
Alignment:
Q  328 cttctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaa 395  Q
    ||||||| |||||| ||||||||  |||||||||||| |||||| | | ||||||| |||||||||||    
T  26104510 cttctctggacatacatagagcatcttggacatctctgccatttttctcttttagccaactccaaaaa 26104443  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 320
Target Start/End: Complemental strand, 21261496 - 21261462
Alignment:
Q  286 gaatacaaaacaaacctgcatttcatgtgttcaca 320  Q
    |||||||||| ||||||||||||||||||||||||    
T  21261496 gaatacaaaataaacctgcatttcatgtgttcaca 21261462  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Original strand, 28219574 - 28219607
Alignment:
Q  286 gaatacaaaacaaacctgcatttcatgtgttcac 319  Q
    |||||||||| |||||||||||||||||||||||    
T  28219574 gaatacaaaataaacctgcatttcatgtgttcac 28219607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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